Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FGKAn22_RS11065 Genome accession   NZ_AP019536
Coordinates   2279674..2280891 (+) Length   405 a.a.
NCBI ID   WP_212785691.1    Uniprot ID   A0AAN1T1Q1
Organism   Ferrigenium kumadai strain An22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2274674..2285891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGKAn22_RS11050 (FGKAn22_21450) ilvD 2275566..2277413 (-) 1848 WP_212785688.1 dihydroxy-acid dehydratase -
  FGKAn22_RS11055 (FGKAn22_21460) lgt 2277477..2278259 (+) 783 WP_212785689.1 prolipoprotein diacylglyceryl transferase -
  FGKAn22_RS11060 (FGKAn22_21470) - 2278315..2279595 (+) 1281 WP_212785690.1 HlyC/CorC family transporter -
  FGKAn22_RS11065 (FGKAn22_21480) pilC 2279674..2280891 (+) 1218 WP_212785691.1 type II secretion system F family protein Machinery gene
  FGKAn22_RS11070 (FGKAn22_21490) pilD 2280948..2281760 (+) 813 WP_212787222.1 A24 family peptidase Machinery gene
  FGKAn22_RS11075 (FGKAn22_21500) coaE 2281757..2282380 (+) 624 WP_212785692.1 dephospho-CoA kinase -
  FGKAn22_RS11080 (FGKAn22_21510) zapD 2282444..2283205 (+) 762 WP_212785693.1 cell division protein ZapD -
  FGKAn22_RS11085 (FGKAn22_21520) - 2283208..2283399 (+) 192 WP_212785694.1 DNA gyrase inhibitor YacG -
  FGKAn22_RS11090 (FGKAn22_21530) - 2283387..2284325 (-) 939 WP_212785695.1 Nudix family hydrolase -
  FGKAn22_RS11095 (FGKAn22_21540) - 2284312..2285175 (-) 864 WP_212785696.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44334.24 Da        Isoelectric Point: 9.5370

>NTDB_id=72681 FGKAn22_RS11065 WP_212785691.1 2279674..2280891(+) (pilC) [Ferrigenium kumadai strain An22]
MAVAPKTEKAKEYSYLWEGKDKSGKLVKGEMRAPGEASVSAHLRRQGINVTKVKRLRASAKPVTEKDITLFTRQLATMLK
SGVPLLQAFDIVGKGHSNPSVARLLFDIKTDVETGSSLQQAFRKYPLYFDDLYCNLIGAGEAAGILDALLDRLATYKEKI
QAIKSKIKSALFYPVSIIVVAFIITAVIMIFVIPAFKELFSSFGADLPAPTLFVMAVSDFFVAWWWAIFGAIGGGLYAFF
YFWKRSKKMQAVMDRLMLKLPIFGELIRKASIARWSRTLATMFAAGVPLVEAFDSVAGAAGNAVYFDATKVIQREVSTGN
SLTVAMQNTEVFPSMVLQMVAIGEEAGSLDAMLSKVADFYEGEVDDAVEALSSLMEPIIMVVLGTLIGGMVIAMYLPIFK
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=72681 FGKAn22_RS11065 WP_212785691.1 2279674..2280891(+) (pilC) [Ferrigenium kumadai strain An22]
ATGGCTGTCGCACCGAAAACAGAAAAAGCAAAAGAGTATTCCTACCTCTGGGAAGGTAAGGATAAAAGCGGCAAACTGGT
CAAAGGCGAGATGCGTGCGCCCGGCGAAGCCAGCGTCTCCGCCCACCTGCGCCGCCAGGGCATTAACGTCACGAAGGTAA
AACGCCTGCGTGCCAGCGCCAAACCTGTCACCGAGAAGGACATCACGCTGTTCACTCGCCAGCTGGCCACCATGCTGAAA
TCCGGCGTCCCCCTGCTGCAGGCTTTCGACATCGTCGGCAAGGGCCACAGCAACCCTTCCGTGGCACGCCTGCTGTTCGA
CATCAAGACCGACGTGGAAACCGGCAGCAGCCTGCAACAGGCATTCCGGAAGTACCCGCTGTATTTCGACGACCTGTATT
GCAACCTGATCGGCGCCGGCGAGGCCGCAGGTATCCTCGACGCGCTGCTGGACCGCTTGGCAACCTATAAGGAAAAGATC
CAGGCCATCAAGAGCAAGATCAAATCGGCGCTGTTCTACCCAGTATCCATCATCGTGGTGGCCTTCATCATCACCGCCGT
GATCATGATCTTCGTGATTCCCGCATTCAAGGAGCTGTTCTCCAGCTTTGGCGCCGACCTGCCGGCCCCGACACTGTTCG
TGATGGCTGTATCCGACTTCTTCGTCGCATGGTGGTGGGCGATCTTCGGTGCCATCGGCGGCGGACTGTACGCATTCTTC
TATTTCTGGAAGCGCAGCAAAAAGATGCAGGCAGTCATGGACCGGCTCATGCTCAAACTGCCGATCTTCGGCGAACTGAT
CCGCAAGGCCAGTATCGCGCGCTGGAGCCGCACGCTTGCCACCATGTTCGCCGCTGGCGTGCCGCTGGTCGAGGCCTTCG
ATTCGGTCGCGGGCGCGGCAGGCAATGCGGTGTATTTCGATGCCACAAAGGTCATCCAGCGCGAAGTCAGCACCGGCAAC
AGCCTGACCGTCGCCATGCAGAACACCGAGGTATTTCCGAGCATGGTGCTGCAAATGGTCGCCATCGGTGAGGAAGCCGG
TTCGCTGGATGCCATGCTGAGCAAGGTGGCCGACTTCTATGAGGGCGAAGTGGATGACGCCGTCGAAGCACTGTCCAGCC
TGATGGAACCCATCATTATGGTGGTGCTGGGCACGCTGATCGGCGGCATGGTGATTGCGATGTACCTGCCGATCTTCAAG
ATGGGCCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.156

98.025

0.531
  pilG Neisseria gonorrhoeae MS11

53.149

98.025

0.521
  pilC Pseudomonas stutzeri DSM 10701

52.882

98.519

0.521
  pilG Neisseria meningitidis 44/76-A

52.897

98.025

0.519
  pilC Acinetobacter baumannii D1279779

51.256

98.272

0.504
  pilC Acinetobacter baylyi ADP1

50.63

98.025

0.496
  pilC Vibrio cholerae strain A1552

42.25

98.765

0.417
  pilC Vibrio campbellii strain DS40M4

39.506

100

0.395
  pilC Thermus thermophilus HB27

38.945

98.272

0.383

Multiple sequence alignment