Detailed information NTG0072682

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FGKAn22_RS11070
• Genome accession: NZ_AP019536
• Coordinates: 2280948..2281760 (+)
• Length: 270 a.a.
• NCBI ID: WP_212787222.1
• Uniprot ID: -
• Organism: Ferrigenium kumadai strain An22
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2275948..2286760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGKAn22_RS11055 (FGKAn22_21460)	lgt	2277477..2278259 (+)	783	WP_212785689.1	prolipoprotein diacylglyceryl transferase	-
FGKAn22_RS11060 (FGKAn22_21470)	-	2278315..2279595 (+)	1281	WP_212785690.1	HlyC/CorC family transporter	-
FGKAn22_RS11065 (FGKAn22_21480)	pilC	2279674..2280891 (+)	1218	WP_212785691.1	type II secretion system F family protein	Machinery gene
FGKAn22_RS11070 (FGKAn22_21490)	pilD	2280948..2281760 (+)	813	WP_212787222.1	A24 family peptidase	Machinery gene
FGKAn22_RS11075 (FGKAn22_21500)	coaE	2281757..2282380 (+)	624	WP_212785692.1	dephospho-CoA kinase	-
FGKAn22_RS11080 (FGKAn22_21510)	zapD	2282444..2283205 (+)	762	WP_212785693.1	cell division protein ZapD	-
FGKAn22_RS11085 (FGKAn22_21520)	-	2283208..2283399 (+)	192	WP_212785694.1	DNA gyrase inhibitor YacG	-
FGKAn22_RS11090 (FGKAn22_21530)	-	2283387..2284325 (-)	939	WP_212785695.1	Nudix family hydrolase	-
FGKAn22_RS11095 (FGKAn22_21540)	-	2284312..2285175 (-)	864	WP_212785696.1	ATP-binding protein	-
FGKAn22_RS11100 (FGKAn22_21550)	argJ	2285327..2286553 (-)	1227	WP_212785697.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 270 a.a.
• Molecular weight: 29354.81 Da
• Isoelectric Point: 8.0594

>NTDB_id=72682 FGKAn22_RS11070 WP_212787222.1 2280948..2281760(+) (pilD) [Ferrigenium kumadai strain An22]
MLGLMVGSFLNVVIHRLPRMMELGWQQQCAELRGEEPLAHPRYNLIAPRSACPHCNHAISAWENIPVVSYLLLRGKCKGC
GATISPRYPIIEAVSGILSAYAAWHFGFGWATVGALLLIWALLALTAIDFDTQLLPDDVTLPLLWTGLLFNLSGTYTSLH
SAVLGAIFGYLALWAVYWLFKFATGKEGMGYGDFKLLAALGAWLGWQMLPLIILLSSLVGAVVGIVLIVATKHGRHIPIP
FGPYLAGGGLIALFWGQTLTQSYLQLLAAP

Nucleotide

• Length: 813 bp

>NTDB_id=72682 FGKAn22_RS11070 WP_212787222.1 2280948..2281760(+) (pilD) [Ferrigenium kumadai strain An22]
ATGCTCGGCCTGATGGTCGGCAGCTTCTTGAACGTGGTGATCCACCGCCTGCCGAGGATGATGGAACTCGGCTGGCAACA
GCAATGCGCCGAACTGCGCGGCGAGGAGCCCCTCGCCCACCCGCGCTACAACCTCATCGCGCCGCGTTCCGCCTGCCCGC
ACTGCAACCACGCCATCAGCGCATGGGAAAACATCCCCGTCGTGAGTTACCTGCTGCTGCGCGGCAAATGCAAGGGATGC
GGTGCAACCATCTCACCGCGCTACCCGATCATCGAGGCGGTCAGCGGCATCCTGAGCGCCTACGCGGCATGGCACTTCGG
CTTCGGCTGGGCGACGGTTGGCGCGCTGCTACTCATCTGGGCACTGCTGGCGCTCACGGCGATCGACTTCGATACCCAAC
TGCTGCCCGATGACGTCACCCTGCCGCTCCTGTGGACCGGTTTGCTGTTCAACCTCTCCGGCACCTACACCAGCCTGCAC
AGCGCGGTGCTGGGCGCGATCTTTGGCTATCTCGCGCTGTGGGCCGTGTACTGGCTGTTCAAGTTCGCCACCGGCAAGGA
AGGCATGGGCTACGGCGACTTCAAGCTGCTTGCAGCACTGGGCGCCTGGCTGGGATGGCAGATGCTGCCGCTGATCATTC
TGCTGTCCTCGCTGGTCGGCGCAGTGGTCGGCATCGTCCTGATCGTCGCGACGAAACATGGCCGCCACATTCCCATCCCC
TTCGGCCCCTATCTCGCCGGCGGCGGGCTGATCGCCCTGTTCTGGGGACAAACGCTGACGCAAAGCTATCTGCAATTGCT
CGCCGCACCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (116-225)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (2-106)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.184	98.889	0.526
pilD	Vibrio cholerae strain A1552	53.184	98.889	0.526
pilD	Acinetobacter baumannii D1279779	52.256	98.519	0.515
pilD	Acinetobacter nosocomialis M2	51.88	98.519	0.511
pilD	Neisseria gonorrhoeae MS11	53.937	94.074	0.507