Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYP20_RS25040 Genome accession   NZ_CP103965
Coordinates   5702534..5703751 (+) Length   405 a.a.
NCBI ID   WP_259496700.1    Uniprot ID   -
Organism   Pseudomonas sp. N3-W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5697534..5708751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP20_RS25020 (NYP20_25020) - 5698865..5699164 (+) 300 WP_259496693.1 DUF2845 domain-containing protein -
  NYP20_RS25025 (NYP20_25025) - 5699479..5699832 (-) 354 WP_259496696.1 BON domain-containing protein -
  NYP20_RS25030 (NYP20_25030) - 5700189..5700605 (-) 417 WP_259496697.1 pilin -
  NYP20_RS25035 (NYP20_25035) pilB 5700831..5702531 (+) 1701 WP_259496699.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NYP20_RS25040 (NYP20_25040) pilC 5702534..5703751 (+) 1218 WP_259496700.1 type II secretion system F family protein Machinery gene
  NYP20_RS25045 (NYP20_25045) pilD 5703753..5704625 (+) 873 WP_259496702.1 A24 family peptidase Machinery gene
  NYP20_RS25050 (NYP20_25050) coaE 5704622..5705245 (+) 624 WP_259496703.1 dephospho-CoA kinase -
  NYP20_RS25055 (NYP20_25055) yacG 5705242..5705442 (+) 201 WP_259496704.1 DNA gyrase inhibitor YacG -
  NYP20_RS25060 (NYP20_25060) - 5705455..5705670 (-) 216 WP_259496705.1 hypothetical protein -
  NYP20_RS25065 (NYP20_25065) - 5705736..5706425 (-) 690 WP_259496707.1 energy-coupling factor ABC transporter permease -
  NYP20_RS25070 (NYP20_25070) - 5707050..5708270 (+) 1221 WP_259503269.1 MASE1 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44259.18 Da        Isoelectric Point: 10.2312

>NTDB_id=726679 NYP20_RS25040 WP_259496700.1 5702534..5703751(+) (pilC) [Pseudomonas sp. N3-W]
MAVKAAKISVYAWEGTDRKGTKLTGELSGQNPALIKAQLRKQGINPGKVRRKSISIFNLGKRIKPQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
ESLKAKIKKAMTYPLAVVFVAAIVTGILLVKVVPQFQSVFAGFGAQLPAFTLMVIALSEFMQQWWWLVLGVLVAGVFGLR
RASRKSQAFRDRMDIWLLKMPLVGALMYKSAVARYARTLSTTFAAGVPLVDALESVAGATGNIVFKRAVLRIRQDVSTGM
QLNFSMRSAGIFPNMAIQMTAIGEESGALDDMLDKVASFYESEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=726679 NYP20_RS25040 WP_259496700.1 5702534..5703751(+) (pilC) [Pseudomonas sp. N3-W]
ATGGCGGTCAAGGCAGCAAAAATCAGTGTGTACGCCTGGGAAGGCACCGACAGGAAAGGCACGAAACTGACCGGCGAACT
GAGTGGTCAGAACCCGGCGCTGATCAAGGCACAGTTACGCAAGCAAGGCATCAACCCTGGCAAGGTGCGCAGGAAATCCA
TCTCGATCTTCAACCTGGGCAAACGCATCAAGCCCCAGGACATTGCCCTGTTCACGCGGCAGATGGCGACCATGATGAAA
GCCGGCGTGCCGCTGTTGCAGTCGTTCGACATCATCGGCGAAGGCTTCGACAACCCGGCCATGCGTAAACTGGTGGACGA
GGTCAAACAGGAAGTCGCGGCGGGCAACAGCTTCGCTGCCTCGCTGCGCAAGAAACCGCAATATTTTGACGAGTTGTATT
GCAACCTGGTGGACGCTGGCGAACAGGCCGGCGCCCTCGACACGCTGCTGGACCGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCGATGACTTACCCGCTGGCGGTGGTGTTCGTCGCGGCCATTGTCACCGGTAT
TTTGCTGGTCAAGGTCGTCCCGCAATTCCAGTCGGTGTTCGCCGGGTTTGGCGCACAATTGCCGGCGTTTACGTTGATGG
TGATCGCCCTGTCGGAGTTCATGCAGCAGTGGTGGTGGCTGGTCCTCGGCGTGCTGGTGGCGGGGGTATTCGGCTTGCGC
CGCGCGTCCAGGAAGTCCCAGGCCTTTCGCGACCGGATGGACATCTGGCTGCTGAAGATGCCGCTGGTGGGCGCGCTGAT
GTACAAGTCGGCGGTGGCCCGCTATGCGCGAACGCTGTCGACGACCTTCGCCGCCGGGGTGCCTTTGGTGGACGCGCTGG
AATCCGTGGCCGGTGCCACTGGCAACATCGTGTTCAAGCGTGCGGTGCTACGTATCAGGCAGGATGTTTCAACGGGCATG
CAGCTGAATTTCTCCATGCGCAGCGCTGGCATCTTTCCGAACATGGCGATTCAAATGACCGCCATCGGTGAAGAGTCTGG
CGCCCTGGATGACATGCTCGACAAGGTTGCCAGTTTCTACGAGTCCGAAGTGGACAACATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTCGGTGTTATCGTCGGCGGCCTGGTGGTTGCCATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baylyi ADP1

60.294

100

0.607
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Vibrio cholerae strain A1552

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

37.406

99.012

0.37