Detailed information NTG0726680

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NYP20_RS25045
• Genome accession: NZ_CP103965
• Coordinates: 5703753..5704625 (+)
• Length: 290 a.a.
• NCBI ID: WP_259496702.1
• Uniprot ID: -
• Organism: Pseudomonas sp. N3-W
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5698753..5709625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYP20_RS25020 (NYP20_25020)	-	5698865..5699164 (+)	300	WP_259496693.1	DUF2845 domain-containing protein	-
NYP20_RS25025 (NYP20_25025)	-	5699479..5699832 (-)	354	WP_259496696.1	BON domain-containing protein	-
NYP20_RS25030 (NYP20_25030)	-	5700189..5700605 (-)	417	WP_259496697.1	pilin	-
NYP20_RS25035 (NYP20_25035)	pilB	5700831..5702531 (+)	1701	WP_259496699.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NYP20_RS25040 (NYP20_25040)	pilC	5702534..5703751 (+)	1218	WP_259496700.1	type II secretion system F family protein	Machinery gene
NYP20_RS25045 (NYP20_25045)	pilD	5703753..5704625 (+)	873	WP_259496702.1	A24 family peptidase	Machinery gene
NYP20_RS25050 (NYP20_25050)	coaE	5704622..5705245 (+)	624	WP_259496703.1	dephospho-CoA kinase	-
NYP20_RS25055 (NYP20_25055)	yacG	5705242..5705442 (+)	201	WP_259496704.1	DNA gyrase inhibitor YacG	-
NYP20_RS25060 (NYP20_25060)	-	5705455..5705670 (-)	216	WP_259496705.1	hypothetical protein	-
NYP20_RS25065 (NYP20_25065)	-	5705736..5706425 (-)	690	WP_259496707.1	energy-coupling factor ABC transporter permease	-
NYP20_RS25070 (NYP20_25070)	-	5707050..5708270 (+)	1221	WP_259503269.1	MASE1 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32268.56 Da
• Isoelectric Point: 7.7089

>NTDB_id=726680 NYP20_RS25045 WP_259496702.1 5703753..5704625(+) (pilD) [Pseudomonas sp. N3-W]
MPLNEFLTLYPLAFIIIALILGLLIGSFLNVVVWRLPKMLEREWRIQAHDVLGLPPEAPGPTYNLMLPHSRCPHCDHSIR
AWENIPVFSYLFLRGRCSNCAAPISKRYPLTELACGVLSAFIAWQYGFGWPAGMLLILTWGLLAMSLIDAEHQLLPDALV
LPLLWLGLIINSFGLFMSLNAALWGAVAGYMALWSVFWVFKLITGKDGIGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGVIVLRLRDEKNSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=726680 NYP20_RS25045 WP_259496702.1 5703753..5704625(+) (pilD) [Pseudomonas sp. N3-W]
ATGCCCCTCAATGAATTTCTGACGCTCTACCCGCTGGCCTTCATCATCATCGCGCTGATACTCGGCCTGTTGATCGGCAG
TTTTCTCAACGTGGTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGGGAGTGGCGAATCCAGGCCCACGACGTGCTGGGGC
TGCCGCCCGAAGCACCCGGTCCGACCTACAACCTGATGTTGCCGCACTCGCGCTGTCCGCATTGCGATCACTCGATCCGC
GCCTGGGAAAATATCCCGGTGTTCAGTTATCTGTTTTTACGCGGTCGTTGCTCGAACTGCGCGGCGCCTATCAGTAAGCG
TTATCCCCTGACCGAACTGGCCTGCGGTGTGCTATCGGCGTTCATTGCCTGGCAGTACGGTTTCGGCTGGCCGGCCGGCA
TGCTGCTGATCCTGACCTGGGGTCTGCTGGCCATGAGCCTGATTGACGCCGAACATCAGTTGCTGCCCGATGCCCTGGTC
CTGCCATTGTTGTGGCTGGGGCTGATCATCAACAGTTTCGGGCTATTCATGTCATTGAACGCGGCGCTGTGGGGGGCAGT
GGCCGGCTACATGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGACT
TCAAGCTGCTGGCGATGCTGGGGGCTTGGGGCGGCTGGCAGATTTTACCGCTGACAATCCTGCTTTCATCCCTGGTGGGC
GCCATTATCGGCGTGATTGTGCTGCGCCTGCGCGACGAAAAAAACTCGACGCCGATCCCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.228	98.276	0.503
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	49.817	94.138	0.469
pilD	Neisseria gonorrhoeae MS11	50	93.103	0.466
pilD	Acinetobacter nosocomialis M2	49.084	94.138	0.462