Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR30_RS09080 Genome accession   NZ_CP103875
Coordinates   1877687..1878157 (+) Length   156 a.a.
NCBI ID   WP_302500670.1    Uniprot ID   -
Organism   Gallibacterium salpingitidis strain FC22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1872687..1883157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR30_RS09055 (NYR30_09055) - 1873841..1874011 (-) 171 WP_197495490.1 antitoxin VbhA family protein -
  NYR30_RS09060 (NYR30_09060) dusA 1874145..1875125 (-) 981 WP_066114170.1 tRNA dihydrouridine(20/20a) synthase DusA -
  NYR30_RS09065 (NYR30_09065) - 1875112..1876504 (-) 1393 Protein_1763 chloride channel protein -
  NYR30_RS09070 (NYR30_09070) - 1876606..1876941 (-) 336 WP_066110356.1 hypothetical protein -
  NYR30_RS09075 (NYR30_09075) ampD 1877026..1877580 (-) 555 WP_302500668.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NYR30_RS09080 (NYR30_09080) pilA 1877687..1878157 (+) 471 WP_302500670.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR30_RS09085 (NYR30_09085) pilB 1878157..1879566 (+) 1410 WP_302500672.1 GspE/PulE family protein Machinery gene
  NYR30_RS09090 (NYR30_09090) - 1879559..1880764 (+) 1206 WP_302500675.1 type II secretion system F family protein -
  NYR30_RS09095 (NYR30_09095) - 1880971..1881384 (+) 414 WP_302500677.1 prepilin peptidase -
  NYR30_RS09100 (NYR30_09100) - 1881394..1882791 (-) 1398 WP_302500679.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16743.23 Da        Isoelectric Point: 7.6613

>NTDB_id=726341 NYR30_RS09080 WP_302500670.1 1877687..1878157(+) (pilA) [Gallibacterium salpingitidis strain FC22]
MSNKSSSRIHAFYAGFTLIELMIVIAIVAVLATIAIPSYQGYTQKAAVSELIQAAAPYKAEVELCLYNATNKNQCSAGQH
GIQNKPSDLTKFKYLNDISITAGVITVSGKGVLKDISYKMTPSESKQGELIDWLIQCSGDNGIFPAGFCQPTTGTQ

Nucleotide


Download         Length: 471 bp        

>NTDB_id=726341 NYR30_RS09080 WP_302500670.1 1877687..1878157(+) (pilA) [Gallibacterium salpingitidis strain FC22]
ATGAGCAATAAATCATCGTCGAGAATACATGCTTTTTATGCTGGTTTTACCTTAATTGAATTGATGATCGTCATTGCGAT
CGTGGCGGTGTTGGCAACCATTGCGATCCCGTCTTATCAAGGTTATACACAAAAAGCTGCGGTTTCTGAATTAATTCAAG
CAGCTGCCCCTTATAAAGCAGAAGTTGAACTGTGCTTATATAACGCAACCAATAAAAATCAATGTTCTGCCGGGCAGCAT
GGGATTCAAAATAAACCTAGTGATCTGACTAAATTTAAATATCTCAATGATATTTCCATTACCGCAGGAGTTATTACAGT
TTCAGGAAAGGGAGTATTAAAAGATATTTCTTACAAGATGACGCCAAGTGAAAGCAAACAAGGTGAGCTGATCGATTGGC
TGATTCAATGCTCTGGCGATAATGGTATTTTTCCAGCTGGCTTTTGCCAACCAACGACAGGAACGCAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

52.083

92.308

0.481
  pilA Haemophilus influenzae 86-028NP

50.355

90.385

0.455
  pilA Haemophilus influenzae Rd KW20

46.98

95.513

0.449