Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P1T45_RS01110 Genome accession   NZ_CP119427
Coordinates   178134..178541 (+) Length   135 a.a.
NCBI ID   WP_243619590.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173134..183541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS01090 (P1T45_01090) - 175837..176004 (+) 168 WP_308695556.1 hypothetical protein -
  P1T45_RS01095 (P1T45_01095) - 175989..176444 (+) 456 WP_003108647.1 phage holin family protein -
  P1T45_RS11380 - 176560..176886 (+) 327 Protein_169 peptidoglycan amidohydrolase family protein -
  P1T45_RS11385 - 176926..177171 (+) 246 Protein_170 lysin -
  P1T45_RS01105 (P1T45_01105) comGC 177824..178144 (+) 321 WP_003108645.1 competence type IV pilus major pilin ComGC Machinery gene
  P1T45_RS01110 (P1T45_01110) comGD 178134..178541 (+) 408 WP_243619590.1 competence type IV pilus minor pilin ComGD Machinery gene
  P1T45_RS01115 (P1T45_01115) comGE 178513..178812 (+) 300 WP_003108643.1 competence type IV pilus minor pilin ComGE Machinery gene
  P1T45_RS01120 (P1T45_01120) comGF/cglF 178790..179227 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  P1T45_RS01125 (P1T45_01125) comGG 179181..179702 (+) 522 WP_308695560.1 competence type IV pilus minor pilin ComGG -
  P1T45_RS01130 (P1T45_01130) comGH 179809..180765 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  P1T45_RS01135 (P1T45_01135) - 180821..182014 (+) 1194 WP_003108638.1 acetate kinase -
  P1T45_RS01140 (P1T45_01140) - 182125..182337 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  P1T45_RS01145 (P1T45_01145) - 182330..182782 (+) 453 WP_003108634.1 hypothetical protein -
  P1T45_RS01150 (P1T45_01150) - 182791..183444 (+) 654 WP_003108632.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15354.77 Da        Isoelectric Point: 9.6000

>NTDB_id=726342 P1T45_RS01110 WP_243619590.1 178134..178541(+) (comGD) [Streptococcus parauberis strain KSP45]
MLNKEVSAFTYFESLLCLVITCFSVIILTTSVGTVFEKVTNNLFYIEFENFYRHSQKISILKRVAGTMVFKEKSISYHNE
TITLPDTIRLGFVNKVKINQFGGNHSLAKINFISSDETVTYTLNLGSGTYKKTKN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=726342 P1T45_RS01110 WP_243619590.1 178134..178541(+) (comGD) [Streptococcus parauberis strain KSP45]
ATGTTAAATAAGGAAGTATCAGCGTTTACCTATTTTGAATCTTTACTATGTCTAGTAATTACTTGTTTTTCAGTTATTAT
ATTGACAACAAGTGTGGGTACAGTATTTGAAAAAGTTACAAATAATCTATTCTATATTGAATTTGAAAATTTTTATCGGC
ATAGTCAAAAAATTTCCATACTAAAACGGGTTGCAGGAACAATGGTATTTAAGGAAAAATCAATTTCATATCACAATGAA
ACAATTACCTTACCAGATACAATCAGACTTGGATTTGTTAACAAGGTAAAGATAAACCAGTTTGGTGGAAATCATTCCCT
TGCTAAAATAAATTTTATTAGTTCGGATGAAACTGTTACTTATACTCTAAATTTAGGAAGTGGTACTTATAAAAAAACAA
AAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

40.458

97.037

0.393
  comGD Streptococcus mutans UA159

40.458

97.037

0.393