Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR66_RS08385 Genome accession   NZ_CP103829
Coordinates   1812699..1813334 (+) Length   211 a.a.
NCBI ID   WP_279455818.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 2863     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807699..1818334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR66_RS08340 (NYR66_08345) rplP 1807766..1808176 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR66_RS08345 (NYR66_08350) rpsC 1808190..1808894 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR66_RS08350 (NYR66_08355) rplV 1808913..1809245 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR66_RS08355 (NYR66_08360) rpsS 1809256..1809531 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR66_RS08360 (NYR66_08365) rplB 1809559..1810380 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR66_RS08365 (NYR66_08370) rplW 1810401..1810706 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR66_RS08370 (NYR66_08375) rplD 1810703..1811305 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR66_RS08375 (NYR66_08380) rplC 1811321..1811947 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR66_RS08380 (NYR66_08385) rpsJ 1811973..1812284 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR66_RS08385 (NYR66_08390) sxy/tfoX 1812699..1813334 (+) 636 WP_279455818.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR66_RS08390 (NYR66_08395) rpsT 1813393..1813656 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR66_RS08395 (NYR66_08400) murJ 1814060..1815628 (+) 1569 WP_279436938.1 murein biosynthesis integral membrane protein MurJ -
  NYR66_RS08400 (NYR66_08405) - 1815648..1816715 (+) 1068 WP_279436939.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24703.88 Da        Isoelectric Point: 9.8103

>NTDB_id=725728 NYR66_RS08385 WP_279455818.1 1812699..1813334(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 2863]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLEEIAQTISIHFLVDRHISNRSKIF
YHLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFMP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725728 NYR66_RS08385 WP_279455818.1 1812699..1813334(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 2863]
ATGAAATACACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
CTCGTTCTTAGGTATCTTTAAAGAAGATACCATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAGTCGATGC
AATATTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGCCATATCAGCAATCGTTCTAAAATCTTT
TATCATCTTCCTCCTTCCATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGCTGGATTACGGAAAAGATTCATGCCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

92.381

99.526

0.919
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.208

100

0.635
  sxy/tfoX Glaesserella parasuis strain SC1401

40

99.526

0.398