Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR66_RS09330 Genome accession   NZ_CP103829
Coordinates   1997646..1998800 (+) Length   384 a.a.
NCBI ID   WP_279455889.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 2863     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1992646..2003800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR66_RS09295 (NYR66_09300) - 1992924..1993214 (+) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR66_RS09300 (NYR66_09305) - 1993302..1993631 (+) 330 WP_279455885.1 SMR family transporter -
  NYR66_RS09305 (NYR66_09310) - 1993814..1994353 (-) 540 WP_279455886.1 stationary phase growth adaptation protein -
  NYR66_RS09310 (NYR66_09315) - 1994344..1994856 (-) 513 WP_279455887.1 hypothetical protein -
  NYR66_RS09315 (NYR66_09320) - 1995230..1995724 (-) 495 WP_279455888.1 hemerythrin domain-containing protein -
  NYR66_RS09320 (NYR66_09325) rfaD 1995883..1996809 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR66_RS09325 (NYR66_09330) def 1996949..1997461 (-) 513 WP_005599196.1 peptide deformylase -
  NYR66_RS09330 (NYR66_09335) dprA 1997646..1998800 (+) 1155 WP_279455889.1 DNA-processing protein DprA Machinery gene
  NYR66_RS09335 (NYR66_09340) - 1998845..2000848 (-) 2004 WP_279455890.1 oligopeptide transporter, OPT family -
  NYR66_RS09340 (NYR66_09345) - 2001069..2002424 (-) 1356 WP_279455891.1 PTS ascorbate transporter subunit IIC -
  NYR66_RS09345 (NYR66_09350) - 2002433..2002705 (-) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR66_RS09350 (NYR66_09355) secE 2003011..2003424 (+) 414 WP_039198278.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42938.18 Da        Isoelectric Point: 5.4329

>NTDB_id=725732 NYR66_RS09330 WP_279455889.1 1997646..1998800(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 2863]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESTLAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEAEQAVEKTQFFAKANVPNRGN
HLAKKLPEMTACQQQIVEHIGLDPISIDDLAKVTTLEVETLLVELLGLELLSVIKQVNGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725732 NYR66_RS09330 WP_279455889.1 1997646..1998800(+) (dprA) [Actinobacillus equuli subsp. haemolyticus strain 2863]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGAATAGCTCGCTTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTACATTGGCGTGGGCGGAGCAACCGAATCAACACTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATTGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAACAGAT
TGTTGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCCACGGTGAATAGCGGTTCACTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGCCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACTGAGACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAAGCGGAACAAGCGGTCGAAAAAACACAATTTTTTGCAAAAGCCAACGTGCCGAATAGGGGCAAT
CATCTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGAT
TGATGATTTAGCGAAAGTGACCACATTGGAGGTGGAAACGCTATTAGTCGAGTTACTTGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTGAATGGTGGTTATGTAAGGCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.016

99.219

0.734
  dprA Vibrio campbellii strain DS40M4

45.669

99.219

0.453
  dprA Haemophilus influenzae Rd KW20

49.568

90.365

0.448
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375