Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PZ484_RS03745 Genome accession   NZ_CP119298
Coordinates   779166..779663 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 774166..784663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS03730 bfr 774174..774638 (+) 465 WP_003093668.1 bacterioferritin -
  PZ484_RS03735 uvrA 774710..777547 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PZ484_RS03740 - 777761..779149 (+) 1389 WP_003103910.1 MFS transporter -
  PZ484_RS03745 ssb 779166..779663 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PZ484_RS03750 pchA 779752..781182 (-) 1431 WP_213870630.1 isochorismate synthase PchA -
  PZ484_RS03755 pchB 781179..781484 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  PZ484_RS03760 pchC 781484..782239 (-) 756 WP_003118944.1 pyochelin biosynthesis editing thioesterase PchC -
  PZ484_RS03765 pchD 782236..783879 (-) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=725570 PZ484_RS03745 WP_003114685.1 779166..779663(+) (ssb) [Pseudomonas aeruginosa strain SNDPR-01]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=725570 PZ484_RS03745 WP_003114685.1 779166..779663(+) (ssb) [Pseudomonas aeruginosa strain SNDPR-01]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515