Detailed information NTG0725568

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NYR77_RS02990
• Genome accession: NZ_CP103822
• Coordinates: 658593..659972 (-)
• Length: 459 a.a.
• NCBI ID: WP_279441157.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. haemolyticus strain 3617
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 653593..664972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR77_RS02965 (NYR77_02960)	-	653850..655055 (+)	1206	WP_279441156.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
NYR77_RS02970 (NYR77_02965)	ribE	655130..655591 (+)	462	WP_005600491.1	6,7-dimethyl-8-ribityllumazine synthase	-
NYR77_RS02975 (NYR77_02970)	greB	655681..656169 (-)	489	WP_275216992.1	transcription elongation factor GreB	-
NYR77_RS02980 (NYR77_02975)	-	656179..657113 (-)	935	Protein_574	KpsF/GutQ family sugar-phosphate isomerase	-
NYR77_RS02985 (NYR77_02980)	pepB	657241..658527 (-)	1287	WP_279441405.1	aminopeptidase PepB	-
NYR77_RS02990 (NYR77_02985)	radA	658593..659972 (-)	1380	WP_279441157.1	DNA repair protein RadA	Machinery gene
NYR77_RS02995 (NYR77_02990)	pilA	660153..660590 (+)	438	WP_279441158.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR77_RS03000 (NYR77_02995)	pilB	660611..661996 (+)	1386	WP_279441159.1	GspE/PulE family protein	Machinery gene
NYR77_RS03005 (NYR77_03000)	pilC	661989..663182 (+)	1194	WP_279441160.1	type II secretion system F family protein	Machinery gene
NYR77_RS03010 (NYR77_03005)	-	663182..663856 (+)	675	WP_279441161.1	prepilin peptidase	-
NYR77_RS03015 (NYR77_03010)	coaE	663878..664516 (+)	639	WP_279441162.1	dephospho-CoA kinase	-
NYR77_RS03020 (NYR77_03015)	yacG	664498..664686 (+)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49712.40 Da
• Isoelectric Point: 7.9500

>NTDB_id=725568 NYR77_RS02990 WP_279441157.1 658593..659972(-) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3617]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDTSL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide

• Length: 1380 bp

>NTDB_id=725568 NYR77_RS02990 WP_279441157.1 658593..659972(-) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3617]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCTGGAGAAACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCTGGTTCTGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCTGGCCCAAAAGTGTTGGAACACGCTATTGATACCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGTGCGGTAAATGAACTTGG
TGTATTTGCTATGACTGAACAAGGTCTACGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCGTTGCCACAAGACTTAGTGATCTTTGGTGAAGTGGGT
CTTGCTGGTGAAATCCGTCCGGTACCGAGCGGCCAAGAGCGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
TGTACCGTTTGGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (83-224)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.234	99.564	0.49
radA	Streptococcus mitis NCTC 12261	45.055	99.129	0.447
radA	Streptococcus pneumoniae Rx1	44.835	99.129	0.444
radA	Streptococcus pneumoniae D39	44.835	99.129	0.444
radA	Streptococcus pneumoniae R6	44.835	99.129	0.444
radA	Streptococcus pneumoniae TIGR4	44.835	99.129	0.444
radA	Streptococcus mitis SK321	44.835	99.129	0.444