Detailed information NTG0725571

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NYR77_RS03005
• Genome accession: NZ_CP103822
• Coordinates: 661989..663182 (+)
• Length: 397 a.a.
• NCBI ID: WP_279441160.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. haemolyticus strain 3617
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 656989..668182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR77_RS02985 (NYR77_02980)	pepB	657241..658527 (-)	1287	WP_279441405.1	aminopeptidase PepB	-
NYR77_RS02990 (NYR77_02985)	radA	658593..659972 (-)	1380	WP_279441157.1	DNA repair protein RadA	Machinery gene
NYR77_RS02995 (NYR77_02990)	pilA	660153..660590 (+)	438	WP_279441158.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR77_RS03000 (NYR77_02995)	pilB	660611..661996 (+)	1386	WP_279441159.1	GspE/PulE family protein	Machinery gene
NYR77_RS03005 (NYR77_03000)	pilC	661989..663182 (+)	1194	WP_279441160.1	type II secretion system F family protein	Machinery gene
NYR77_RS03010 (NYR77_03005)	-	663182..663856 (+)	675	WP_279441161.1	prepilin peptidase	-
NYR77_RS03015 (NYR77_03010)	coaE	663878..664516 (+)	639	WP_279441162.1	dephospho-CoA kinase	-
NYR77_RS03020 (NYR77_03015)	yacG	664498..664686 (+)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-
NYR77_RS03025 (NYR77_03020)	holA	664763..665788 (-)	1026	WP_279441163.1	DNA polymerase III subunit delta	-
NYR77_RS03030 (NYR77_03025)	lptE	665896..666390 (-)	495	WP_275216984.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44934.51 Da
• Isoelectric Point: 9.7263

>NTDB_id=725571 NYR77_RS03005 WP_279441160.1 661989..663182(+) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3617]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide

• Length: 1194 bp

>NTDB_id=725571 NYR77_RS03005 WP_279441160.1 661989..663182(+) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3617]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTACCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	48.363	100	0.484
pilC	Haemophilus influenzae Rd KW20	39	100	0.393
pilC	Haemophilus influenzae 86-028NP	38.75	100	0.39