Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GYH29_RS19850 Genome accession   NZ_AP019312
Coordinates   4301240..4302463 (-) Length   407 a.a.
NCBI ID   WP_043591358.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4296240..4307463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS19820 (CH06BL_39110) tsaE 4296997..4297482 (+) 486 WP_373454775.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GYH29_RS19825 (CH06BL_39120) - 4297443..4298684 (+) 1242 WP_019100893.1 N-acetylmuramoyl-L-alanine amidase -
  GYH29_RS19830 yacG 4298750..4298938 (-) 189 WP_019100892.1 DNA gyrase inhibitor YacG -
  GYH29_RS19835 (CH06BL_39130) zapD 4298976..4299734 (-) 759 WP_019100891.1 cell division protein ZapD -
  GYH29_RS19840 (CH06BL_39140) coaE 4299773..4300384 (-) 612 WP_039754293.1 dephospho-CoA kinase -
  GYH29_RS19845 (CH06BL_39150) pilD 4300374..4301243 (-) 870 WP_161524280.1 A24 family peptidase Machinery gene
  GYH29_RS19850 (CH06BL_39160) pilC 4301240..4302463 (-) 1224 WP_043591358.1 type II secretion system F family protein Machinery gene
  GYH29_RS19855 (CH06BL_39170) pilF 4302535..4304241 (-) 1707 WP_019100887.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GYH29_RS19860 (CH06BL_39180) - 4304462..4305580 (-) 1119 WP_043591364.1 porin -
  GYH29_RS19865 (CH06BL_39190) - 4305897..4307330 (+) 1434 WP_039756876.1 deoxyribodipyrimidine photo-lyase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44704.62 Da        Isoelectric Point: 10.0725

>NTDB_id=72388 GYH29_RS19850 WP_043591358.1 4301240..4302463(-) (pilC) [Chromobacterium haemolyticum strain CH06-BL]
MAVTVAKKATPGFVWEWEGKDKAGKAIRGELRAESEAVAKTQLRRQGINVVKIKRRRAGFGKRITERDITLFTRQLATMM
RAGVPLLQAFDIAAKGHSNPAVTKMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGETGGVLDSLLDKLATYKEK
VMAIKGKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDGFVHYWWLIFGVIFGSLFGF
LYAFKRTPKLQERMDRILLRLPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGASGNQVYADATKRIQNDVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGVLIGGLIIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=72388 GYH29_RS19850 WP_043591358.1 4301240..4302463(-) (pilC) [Chromobacterium haemolyticum strain CH06-BL]
ATGGCAGTCACGGTAGCGAAAAAAGCGACGCCGGGCTTTGTCTGGGAGTGGGAAGGCAAGGACAAGGCGGGCAAGGCGAT
ACGCGGGGAATTGAGAGCGGAGTCCGAGGCGGTGGCCAAGACTCAGCTGCGGCGTCAAGGCATCAATGTCGTCAAGATCA
AGCGTCGGCGCGCCGGGTTTGGCAAGCGCATCACCGAGCGGGACATCACCCTGTTCACCCGGCAGTTGGCGACCATGATG
CGCGCCGGCGTGCCCCTGTTGCAGGCCTTCGACATCGCGGCCAAGGGCCACAGTAATCCCGCCGTGACCAAGATGCTGCT
GGAGGTGCGAGCCGATGTTGAAACCGGATTGTCGCTGGCGGAGGCATTCCGCAAACGTCCCTTGTACTTTGACAAGCTGT
TCTGCAACATCATCGCCGCGGGCGAAACCGGCGGCGTGCTGGACTCCTTGCTGGACAAATTGGCCACTTACAAGGAAAAA
GTGATGGCGATCAAGGGTAAGATCAAGTCGGCCCTGATCTATCCGTCCGCCATTGTCGGCACTGCCTTCATCATTACCGC
CGTAATCATGATTTACGTGATTCCGGCATTCAAGGATTTGTTCTCTAGTTTCGGCGCCAATTTGCCGGCGCCGACGCTGT
TTGTGATCTGGCTGTCGGATGGCTTTGTCCATTACTGGTGGCTGATCTTCGGGGTGATTTTCGGTAGCCTGTTCGGCTTT
CTCTACGCCTTCAAGCGAACGCCCAAGTTGCAAGAGCGGATGGATCGCATCCTGCTGCGCCTGCCGGTGATCGGCGATAT
CATCCGCAAGGCCACCATCGCGCGCTGGGCGCGCACCTTATCCACCTTGTTCGCCGCCGGGGTGCCGCTGGTGGAAGCGC
TGGATTCGGTGGGCGGCGCCTCCGGCAACCAGGTGTACGCGGATGCCACCAAGCGGATTCAGAACGATGTCAGCACCGGT
TCCAGCCTCAACTATTCGATGCAGCGGACCGACTTGTTCCCTAATATGGTGCTGCAGATGACCTCGATTGGGGAGGAGTC
CGGTTCGTTGGACCAGATGTTGGACAAGGTGGCGGATTTTTACGAAGAAGAAGTCGACAATGCGGTTGCCGCGCTGTCCA
GTTTGCTGGAGCCGGCCATCATGGTGATTCTGGGGGTCTTGATCGGCGGTTTGATCATTGCGATGTATATGCCGATTTTC
AAAATGGGGCAGGTGGTTGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.208

99.263

0.538
  pilC Pseudomonas stutzeri DSM 10701

53.086

99.509

0.528
  pilG Neisseria gonorrhoeae MS11

53.453

96.069

0.514
  pilG Neisseria meningitidis 44/76-A

53.197

96.069

0.511
  pilC Acinetobacter baylyi ADP1

50.246

99.754

0.501
  pilC Acinetobacter baumannii D1279779

49.136

99.509

0.489
  pilC Vibrio cholerae strain A1552

38.424

99.754

0.383
  pilC Vibrio campbellii strain DS40M4

39.098

98.034

0.383
  pilC Thermus thermophilus HB27

36.842

98.034

0.361

Multiple sequence alignment