Detailed information NTG0072387

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GYH29_RS19845
• Genome accession: NZ_AP019312
• Coordinates: 4300374..4301243 (-)
• Length: 289 a.a.
• NCBI ID: WP_161524280.1
• Uniprot ID: -
• Organism: Chromobacterium haemolyticum strain CH06-BL
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4295374..4306243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GYH29_RS19810 (CH06BL_39090)	-	4295496..4295912 (+)	417	WP_019100896.1	MaoC family dehydratase	-
GYH29_RS19815 (CH06BL_39100)	queG	4295916..4296998 (-)	1083	WP_324606831.1	tRNA epoxyqueuosine(34) reductase QueG	-
GYH29_RS19820 (CH06BL_39110)	tsaE	4296997..4297482 (+)	486	WP_373454775.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
GYH29_RS19825 (CH06BL_39120)	-	4297443..4298684 (+)	1242	WP_019100893.1	N-acetylmuramoyl-L-alanine amidase	-
GYH29_RS19830	yacG	4298750..4298938 (-)	189	WP_019100892.1	DNA gyrase inhibitor YacG	-
GYH29_RS19835 (CH06BL_39130)	zapD	4298976..4299734 (-)	759	WP_019100891.1	cell division protein ZapD	-
GYH29_RS19840 (CH06BL_39140)	coaE	4299773..4300384 (-)	612	WP_039754293.1	dephospho-CoA kinase	-
GYH29_RS19845 (CH06BL_39150)	pilD	4300374..4301243 (-)	870	WP_161524280.1	A24 family peptidase	Machinery gene
GYH29_RS19850 (CH06BL_39160)	pilC	4301240..4302463 (-)	1224	WP_043591358.1	type II secretion system F family protein	Machinery gene
GYH29_RS19855 (CH06BL_39170)	pilF	4302535..4304241 (-)	1707	WP_019100887.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GYH29_RS19860 (CH06BL_39180)	-	4304462..4305580 (-)	1119	WP_043591364.1	porin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31864.79 Da
• Isoelectric Point: 6.9143

>NTDB_id=72387 GYH29_RS19845 WP_161524280.1 4300374..4301243(-) (pilD) [Chromobacterium haemolyticum strain CH06-BL]
MIEEWRWIAGSYPLAFAGAALALGLLVGSFLNVIIHRLPKMLEAEWRRNCVDCLQLEEDETSEPYNLMRPASHCPQCRAA
VRPWQNIPVLSFVLLRGRCGSCRAKIPWCYPVVELSTGLLFAFLAWRFGWSEQLPAYMGLTAVLLALTFIDADTQLLPDN
LTLPLLWGGLLFNLLTGTVPLADAVIGAMAGYLCLWLLFHGFKLATGKEGMGYGDFKLLAALGAWLGWTLLPLVLLLSSL
VGAVVGVILILLSKHGRGQPLPFGPYLAAAGWIALIWGQDIVNWYLHAY

Nucleotide

• Length: 870 bp

>NTDB_id=72387 GYH29_RS19845 WP_161524280.1 4300374..4301243(-) (pilD) [Chromobacterium haemolyticum strain CH06-BL]
ATGATTGAGGAGTGGCGCTGGATCGCCGGCTCGTATCCGCTGGCTTTCGCCGGCGCGGCGCTGGCGCTGGGTTTGTTGGT
TGGCAGTTTTCTGAATGTGATCATTCATCGCTTGCCCAAGATGCTGGAGGCCGAGTGGCGGCGCAATTGCGTTGATTGTC
TGCAGTTGGAAGAGGACGAGACGTCCGAGCCCTATAACTTAATGCGGCCTGCCTCGCACTGCCCGCAATGCCGGGCCGCG
GTGCGTCCGTGGCAGAATATCCCGGTATTGAGCTTTGTGTTGCTGCGCGGACGCTGCGGCAGTTGCCGAGCCAAGATCCC
TTGGTGCTATCCGGTCGTGGAGCTGTCGACTGGGCTGTTGTTCGCTTTCCTGGCCTGGCGTTTCGGCTGGTCGGAACAGC
TGCCGGCCTATATGGGTTTGACCGCGGTGCTGCTGGCCCTGACTTTTATCGACGCGGATACGCAGCTGCTGCCGGACAAC
CTGACTTTGCCCTTGCTGTGGGGGGGCTTGTTATTCAATTTGCTGACCGGCACCGTGCCGCTGGCCGACGCGGTGATAGG
CGCGATGGCGGGCTATCTGTGCCTGTGGTTGCTGTTTCACGGCTTCAAGCTGGCCACCGGCAAGGAGGGCATGGGCTATG
GCGACTTCAAGCTGCTGGCCGCTTTGGGCGCGTGGTTGGGGTGGACTTTGCTGCCCTTGGTGCTTTTGCTGTCTTCGCTG
GTGGGGGCCGTGGTGGGCGTGATCTTGATTTTGCTGTCCAAGCACGGACGCGGTCAGCCGCTGCCGTTTGGCCCTTATCT
TGCGGCCGCCGGCTGGATTGCTTTGATCTGGGGGCAGGACATTGTGAATTGGTATTTGCATGCCTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.405	96.54	0.516
pilD	Vibrio cholerae strain A1552	51.773	97.578	0.505
pilD	Neisseria gonorrhoeae MS11	52.03	93.772	0.488
pilD	Acinetobacter baumannii D1279779	49.442	93.08	0.46
pilD	Acinetobacter nosocomialis M2	48.699	93.08	0.453