Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GYH29_RS01545 Genome accession   NZ_AP019312
Coordinates   346641..347720 (-) Length   359 a.a.
NCBI ID   WP_043592347.1    Uniprot ID   A0AAD0W663
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 341641..352720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS01530 (CH06BL_03000) - 342228..343514 (+) 1287 WP_043592349.1 hypothetical protein -
  GYH29_RS01535 (CH06BL_03010) topA 343583..345883 (-) 2301 WP_043592348.1 type I DNA topoisomerase -
  GYH29_RS01540 (CH06BL_03020) - 346148..346606 (-) 459 WP_019103374.1 DUF494 family protein -
  GYH29_RS01545 (CH06BL_03030) dprA 346641..347720 (-) 1080 WP_043592347.1 DNA-processing protein DprA Machinery gene
  GYH29_RS01550 (CH06BL_03040) - 347717..348751 (-) 1035 WP_043592346.1 LysM peptidoglycan-binding domain-containing protein -
  GYH29_RS01555 (CH06BL_03050) def 348902..349405 (+) 504 WP_019103371.1 peptide deformylase -
  GYH29_RS01560 (CH06BL_03060) fmt 349443..350363 (+) 921 WP_161523087.1 methionyl-tRNA formyltransferase -
  GYH29_RS01565 (CH06BL_03070) htpX 350398..351255 (+) 858 WP_161523088.1 zinc metalloprotease HtpX -
  GYH29_RS01570 (CH06BL_03080) rsmB 351352..352602 (+) 1251 WP_043592330.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 37744.13 Da        Isoelectric Point: 6.0438

>NTDB_id=72369 GYH29_RS01545 WP_043592347.1 346641..347720(-) (dprA) [Chromobacterium haemolyticum strain CH06-BL]
MKAPPHDWLLLALTPGIGPAGFLRLIDAFGGADAALNANSRQTEPLIGKEAAEALQRREAAASAEAALEWAQTPGCQLVS
LLDDDYPPQLAESNAPPPLLFARGRRELLAEPMLAIVGSRAATPQGKQNAENFSRDLAEHGYCIVSGLASGIDAAAHHGA
LGQASSTVAVVGTGIDRVYPASNRQLAHRIAEEGLILSEFALGMGPLAAHFPRRNRIIAGLSRGCLVAEANTGSGSLITA
RLAMENNREVMAIPGSIHNPQSRGCHRLIKDGAKLVETVDDVLDEVGRLQRKRPRAKPAAPTAESPLLEAMGFDPISMDA
LSTTLGLTVGELYAMLLELELAGLVASHPGGLFQRLNLG

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=72369 GYH29_RS01545 WP_043592347.1 346641..347720(-) (dprA) [Chromobacterium haemolyticum strain CH06-BL]
ATGAAAGCTCCGCCGCACGACTGGCTGCTGCTGGCGCTGACGCCCGGCATCGGCCCGGCCGGCTTTCTCCGGTTGATCGA
CGCCTTCGGCGGCGCGGACGCCGCTCTAAACGCCAACAGCCGCCAAACGGAGCCCTTGATCGGCAAAGAAGCGGCCGAAG
CCCTGCAGCGTCGCGAGGCCGCCGCCTCCGCCGAAGCGGCGCTAGAGTGGGCGCAGACGCCAGGCTGCCAGCTGGTGTCG
CTGCTGGACGACGACTACCCGCCGCAACTGGCCGAATCCAACGCGCCGCCGCCGCTGCTGTTTGCCCGCGGGAGGCGCGA
ACTACTGGCCGAACCCATGCTCGCCATCGTGGGCAGCCGCGCCGCCACGCCTCAGGGCAAGCAGAACGCGGAGAACTTCT
CCCGCGACTTGGCCGAACACGGCTATTGCATCGTCAGCGGCCTGGCCAGCGGCATAGACGCCGCGGCTCATCACGGCGCG
CTCGGACAAGCGTCCTCCACCGTCGCGGTGGTCGGCACCGGCATAGACCGAGTCTATCCGGCCAGCAACCGCCAGTTGGC
GCACCGCATCGCGGAGGAAGGCCTGATTCTGTCCGAGTTCGCGCTGGGCATGGGACCGCTGGCCGCTCATTTTCCGCGTC
GCAACCGCATCATCGCCGGCCTCAGCCGCGGCTGCCTGGTGGCGGAGGCCAACACCGGATCCGGCTCGCTGATCACCGCG
CGGCTGGCGATGGAGAACAATCGCGAAGTGATGGCCATCCCCGGCTCCATCCACAACCCCCAGTCTCGCGGCTGTCACCG
GCTGATCAAGGACGGCGCCAAGCTGGTGGAAACCGTGGACGACGTGCTGGACGAAGTCGGCAGGCTGCAACGCAAACGCC
CCCGCGCCAAACCGGCGGCCCCCACCGCGGAATCGCCGCTGCTTGAAGCCATGGGATTTGACCCCATCAGTATGGATGCG
CTTTCGACCACGCTCGGGTTGACTGTGGGGGAGCTTTACGCGATGCTGCTCGAACTTGAGCTGGCCGGCCTGGTGGCCAG
CCATCCCGGCGGGCTTTTTCAGCGCCTGAACCTGGGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(292-351)

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

50.129

100

0.54
  dprA Neisseria meningitidis MC58

50.129

100

0.54
  dprA Neisseria gonorrhoeae MS11

49.61

100

0.532
  dprA Neisseria gonorrhoeae strain FA1090

49.61

100

0.532
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.945

100

0.404
  dprA Vibrio campbellii strain DS40M4

40.39

100

0.404
  dprA Legionella pneumophila strain ERS1305867

47.586

80.78

0.384
  dprA Acinetobacter baylyi ADP1

38.028

98.886

0.376
  dprA Vibrio cholerae strain A1552

41.693

88.858

0.37
  dprA Glaesserella parasuis strain SC1401

42.903

86.351

0.37

Multiple sequence alignment