Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NT399_RS16020 Genome accession   NZ_CP103338
Coordinates   3349758..3350285 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain AB105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3344758..3355285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS16000 (NT399_16000) - 3344947..3345822 (-) 876 WP_114182601.1 hypothetical protein -
  NT399_RS16005 (NT399_16005) aroB 3345838..3346920 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  NT399_RS16010 (NT399_16010) aroK 3346949..3347518 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NT399_RS16015 (NT399_16015) pilQ 3347530..3349695 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  NT399_RS16020 (NT399_16020) pilP 3349758..3350285 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NT399_RS16025 (NT399_16025) pilO 3350296..3351036 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  NT399_RS16030 (NT399_16030) pilN 3351033..3351674 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  NT399_RS16035 (NT399_16035) pilM 3351674..3352732 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=722085 NT399_RS16020 WP_000695065.1 3349758..3350285(-) (pilP) [Acinetobacter baumannii strain AB105]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=722085 NT399_RS16020 WP_000695065.1 3349758..3350285(-) (pilP) [Acinetobacter baumannii strain AB105]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714