Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NX062_RS12335 Genome accession   NZ_CP103328
Coordinates   2308485..2308916 (-) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain KC14-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2303485..2313916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS12285 (NX062_12280) sinI 2303678..2303851 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NX062_RS12290 (NX062_12285) sinR 2303885..2304220 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NX062_RS12295 (NX062_12290) tasA 2304313..2305098 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  NX062_RS12300 (NX062_12295) sipW 2305162..2305734 (-) 573 WP_003230181.1 signal peptidase I SipW -
  NX062_RS12305 (NX062_12300) tapA 2305718..2306479 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  NX062_RS12310 (NX062_12305) yqzG 2306751..2307077 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NX062_RS12315 (NX062_12310) spoIITA 2307119..2307298 (-) 180 WP_029726723.1 YqzE family protein -
  NX062_RS12320 (NX062_12315) comGG 2307370..2307744 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NX062_RS12325 (NX062_12320) comGF 2307745..2308128 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  NX062_RS12330 (NX062_12325) comGE 2308154..2308501 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  NX062_RS12335 (NX062_12330) comGD 2308485..2308916 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NX062_RS12340 (NX062_12335) comGC 2308906..2309202 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NX062_RS12345 (NX062_12340) comGB 2309216..2310253 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  NX062_RS12350 (NX062_12345) comGA 2310240..2311310 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NX062_RS12355 (NX062_12350) - 2311522..2311719 (-) 198 WP_046160584.1 CBS domain-containing protein -
  NX062_RS12360 (NX062_12355) corA 2311721..2312674 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=721987 NX062_RS12335 WP_014480256.1 2308485..2308916(-) (comGD) [Bacillus subtilis strain KC14-1]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=721987 NX062_RS12335 WP_014480256.1 2308485..2308916(-) (comGD) [Bacillus subtilis strain KC14-1]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGGCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986