Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW945_RS07450 Genome accession   NZ_CP102974
Coordinates   1566185..1566631 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1561185..1571631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS07420 (NW945_07420) gcvPA 1562111..1563457 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW945_RS07425 (NW945_07425) gcvT 1563477..1564568 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  NW945_RS07430 (NW945_07430) - 1564727..1565251 (-) 525 WP_001015121.1 shikimate kinase -
  NW945_RS07435 (NW945_07435) - 1565241..1565387 (-) 147 WP_001789879.1 hypothetical protein -
  NW945_RS07440 (NW945_07440) comGF 1565484..1565981 (-) 498 WP_258414194.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW945_RS07445 (NW945_07445) comGE 1565899..1566198 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW945_RS07450 (NW945_07450) comGD 1566185..1566631 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW945_RS07455 (NW945_07455) comGC 1566609..1566920 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW945_RS07460 (NW945_07460) comGB 1566934..1568004 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW945_RS07465 (NW945_07465) comGA 1567976..1568950 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW945_RS07470 (NW945_07470) - 1569002..1569625 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW945_RS07475 (NW945_07475) - 1569622..1569951 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW945_RS07480 (NW945_07480) - 1569951..1570937 (-) 987 WP_000161314.1 ROK family glucokinase -
  NW945_RS07485 (NW945_07485) - 1570934..1571137 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720955 NW945_RS07450 WP_001788899.1 1566185..1566631(-) (comGD) [Staphylococcus aureus strain 01-RR-86]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720955 NW945_RS07450 WP_001788899.1 1566185..1566631(-) (comGD) [Staphylococcus aureus strain 01-RR-86]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1