Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW945_RS07690 Genome accession   NZ_CP102974
Coordinates   1612793..1613479 (-) Length   228 a.a.
NCBI ID   WP_258414199.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607793..1618479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS07670 (NW945_07670) rpsT 1608707..1608958 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW945_RS07675 (NW945_07675) holA 1609003..1609977 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  NW945_RS07680 (NW945_07680) comEC 1610034..1612235 (-) 2202 WP_258414198.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW945_RS07685 (NW945_07685) - 1612240..1612701 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW945_RS07690 (NW945_07690) comEA 1612793..1613479 (-) 687 WP_258414199.1 ComEA family DNA-binding protein Machinery gene
  NW945_RS07695 (NW945_07695) - 1613519..1614235 (-) 717 WP_258414200.1 class I SAM-dependent methyltransferase -
  NW945_RS07700 (NW945_07700) rsfS 1614238..1614591 (-) 354 WP_124780589.1 ribosome silencing factor -
  NW945_RS07705 (NW945_07705) yqeK 1614592..1615176 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW945_RS07710 (NW945_07710) nadD 1615166..1615735 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW945_RS07715 (NW945_07715) yhbY 1615738..1616028 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW945_RS07720 (NW945_07720) aroE 1616032..1616838 (-) 807 WP_072468122.1 shikimate dehydrogenase -
  NW945_RS07725 (NW945_07725) yqeH 1616852..1617952 (-) 1101 WP_258414201.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25771.53 Da        Isoelectric Point: 9.6753

>NTDB_id=720961 NW945_RS07690 WP_258414199.1 1612793..1613479(-) (comEA) [Staphylococcus aureus strain 01-RR-86]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSESNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMASKDRIVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720961 NW945_RS07690 WP_258414199.1 1612793..1613479(-) (comEA) [Staphylococcus aureus strain 01-RR-86]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAGTAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGGCATCTAAGGATAGAAT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.368

100

0.974
  comEA Staphylococcus aureus N315

97.368

100

0.974