Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NWF24_RS04910 Genome accession   NZ_CP102931
Coordinates   1034316..1035545 (-) Length   409 a.a.
NCBI ID   WP_258353225.1    Uniprot ID   -
Organism   Variovorax paradoxus strain JBCE486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029316..1040545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWF24_RS04885 (NWF24_04885) zapD 1029349..1030104 (-) 756 WP_093057441.1 cell division protein ZapD -
  NWF24_RS04890 (NWF24_04890) - 1030135..1031169 (-) 1035 WP_258353221.1 hypothetical protein -
  NWF24_RS04895 (NWF24_04895) - 1031171..1032664 (-) 1494 WP_258353222.1 MBOAT family protein -
  NWF24_RS04900 (NWF24_04900) coaE 1032734..1033342 (-) 609 WP_258353223.1 dephospho-CoA kinase -
  NWF24_RS04905 (NWF24_04905) - 1033351..1034316 (-) 966 WP_258353224.1 A24 family peptidase -
  NWF24_RS04910 (NWF24_04910) pilC 1034316..1035545 (-) 1230 WP_258353225.1 type II secretion system F family protein Machinery gene
  NWF24_RS04915 (NWF24_04915) pilB 1035572..1037305 (-) 1734 WP_097198199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NWF24_RS04925 (NWF24_04925) - 1037547..1038539 (-) 993 WP_258353226.1 polyprenyl synthetase family protein -
  NWF24_RS04930 (NWF24_04930) rplU 1038731..1039042 (+) 312 WP_007833243.1 50S ribosomal protein L21 -
  NWF24_RS04935 (NWF24_04935) rpmA 1039055..1039315 (+) 261 WP_093057448.1 50S ribosomal protein L27 -
  NWF24_RS04940 (NWF24_04940) cgtA 1039387..1040463 (+) 1077 WP_258353227.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44719.45 Da        Isoelectric Point: 9.5340

>NTDB_id=719822 NWF24_RS04910 WP_258353225.1 1034316..1035545(-) (pilC) [Variovorax paradoxus strain JBCE486]
MATVASTRSRDGLKEFVFEWEGKDRNGKMVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPISVIVVAFVVIAIIMIFVIPAFKEVFTSFGADLPAPTLIVISISEFFVSYWWLIFGGIGGGL
YFFMQAWKRNERFQRVMDRALLKVPIFGVLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATTKIQQEV
STGTSLTTAMTNANLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLASLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=719822 NWF24_RS04910 WP_258353225.1 1034316..1035545(-) (pilC) [Variovorax paradoxus strain JBCE486]
ATGGCAACAGTGGCATCCACCCGCTCACGTGATGGGCTCAAGGAGTTTGTCTTCGAATGGGAAGGCAAAGATCGCAACGG
CAAGATGGTGCGCGGTGAGCTTCGTGCCGCCGGCGAAAACCAGGTGCAGGCCGCACTGCGTCGCCAGGGCGTGCTCGCGT
CCAAGATCAAGAAGCGCCGCATGCGCTCCGGCAAGGCGATCAAGCCCAAGGACATCGCCATCTTCACGCGCCAGTTGGCG
ACCATGATGAAGGCCGGCGTGCCCTTGATGCAGTCCTTCGACATCGTCGGGCGCGGCAACGCGAACGCAAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCACCTCGCTGTCGGCTGCCTTCCGCAAGTTCCCGAAGTACTTCG
ACAACCTGTACTGCAACCTGGTGGAGGCCGGCGAAGCGGCCGGTATTCTCGAAGAACTGCTGGACCGGCTGGCCACCTAC
ATGGAAAAGACCGAGGCGATCAAGTCCAAGATCAAGTCGGCATTGATGTACCCGATCTCGGTGATCGTGGTGGCCTTCGT
GGTCATCGCCATCATCATGATCTTCGTCATTCCGGCGTTCAAGGAAGTGTTCACGTCGTTCGGCGCTGACCTGCCCGCGC
CGACGCTGATCGTGATCAGCATCAGCGAATTCTTTGTGTCCTACTGGTGGCTGATCTTCGGCGGCATCGGCGGCGGGCTC
TACTTCTTCATGCAGGCCTGGAAGCGCAACGAGCGCTTTCAAAGAGTCATGGACCGGGCACTGCTGAAGGTACCAATTTT
CGGCGTCCTGATCGAAAAATCCTGCGTAGCCCGCTGGACCCGCACCCTTGCAACCATGTTCGCCGCCGGCGTGCCACTGG
TCGAAGCCCTCGATTCGGTGGGTGGCGCCTCGGGCAACACCGTCTACGGCGACGCCACGACGAAGATCCAGCAGGAGGTC
TCCACAGGCACCAGCCTCACCACGGCCATGACCAACGCCAACCTGTTCCCTTCCATGGTGATCCAGATGACCGCCATTGG
CGAAGAATCCGGCTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTACGAATCAGAAGTGGACGACATGGTCGCAG
GCCTCGCCAGCCTGATGGAACCCATCATCATCGTGTTCCTCGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.713

98.778

0.531
  pilG Neisseria gonorrhoeae MS11

51.515

96.822

0.499
  pilC Acinetobacter baylyi ADP1

51.256

97.311

0.499
  pilG Neisseria meningitidis 44/76-A

51.263

96.822

0.496
  pilC Legionella pneumophila strain ERS1305867

50

97.311

0.487
  pilC Acinetobacter baumannii D1279779

49.622

97.066

0.482
  pilC Vibrio cholerae strain A1552

41.457

97.311

0.403
  pilC Vibrio campbellii strain DS40M4

39.25

97.8

0.384
  pilC Thermus thermophilus HB27

36.993

100

0.379