Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT299_RS10410 Genome accession   NZ_CP117962
Coordinates   1880913..1881449 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain JM109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1875913..1886449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT299_RS10390 soxR 1877641..1878105 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PT299_RS10395 soxS 1878191..1878514 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PT299_RS10400 pdeC 1878517..1880103 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  PT299_RS10405 yjcB 1880533..1880814 (+) 282 WP_001295689.1 YjcB family protein -
  PT299_RS10410 ssb 1880913..1881449 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PT299_RS10415 uvrA 1881703..1884525 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PT299_RS10420 yjbR 1884560..1884916 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PT299_RS10425 yjbQ 1884920..1885336 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PT299_RS10430 aphA 1885447..1886160 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=719822 PT299_RS10410 WP_000168305.1 1880913..1881449(-) (ssb) [Escherichia coli strain JM109]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=719822 PT299_RS10410 WP_000168305.1 1880913..1881449(-) (ssb) [Escherichia coli strain JM109]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489