Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NVB75_RS15495 Genome accession   NZ_CP102929
Coordinates   3415767..3416975 (+) Length   402 a.a.
NCBI ID   WP_258348190.1    Uniprot ID   -
Organism   Pseudomonas sp. CBS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410767..3421975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVB75_RS15470 (NVB75_15470) nadC 3412119..3412967 (+) 849 WP_010175009.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NVB75_RS15475 (NVB75_15475) - 3413102..3413407 (-) 306 WP_076016485.1 DUF6388 family protein -
  NVB75_RS15485 (NVB75_15485) - 3413656..3415065 (-) 1410 WP_258348186.1 O-antigen ligase -
  NVB75_RS15490 (NVB75_15490) - 3415152..3415565 (-) 414 WP_275711403.1 pilin -
  NVB75_RS15495 (NVB75_15495) pilC 3415767..3416975 (+) 1209 WP_258348190.1 type II secretion system F family protein Machinery gene
  NVB75_RS15500 (NVB75_15500) pilD 3416972..3417850 (+) 879 WP_375378922.1 prepilin peptidase Machinery gene
  NVB75_RS15505 (NVB75_15505) coaE 3417847..3418470 (+) 624 WP_258348192.1 dephospho-CoA kinase -
  NVB75_RS15510 (NVB75_15510) yacG 3418467..3418667 (+) 201 WP_063027056.1 DNA gyrase inhibitor YacG -
  NVB75_RS15515 (NVB75_15515) - 3418664..3418879 (-) 216 WP_258348194.1 hypothetical protein -
  NVB75_RS15520 (NVB75_15520) - 3418945..3419634 (-) 690 WP_258348195.1 energy-coupling factor ABC transporter permease -
  NVB75_RS15525 (NVB75_15525) - 3419631..3420098 (-) 468 WP_258348196.1 FAD/FMN-containing dehydrogenase -
  NVB75_RS15530 (NVB75_15530) - 3420201..3420830 (+) 630 WP_008437312.1 DUF1780 domain-containing protein -
  NVB75_RS15535 (NVB75_15535) - 3420920..3421093 (+) 174 WP_076016477.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43080.20 Da        Isoelectric Point: 9.7620

>NTDB_id=719791 NVB75_RS15495 WP_258348190.1 3415767..3416975(+) (pilC) [Pseudomonas sp. CBS]
MNDVSAIYTWEGVNRNGRKVSGETSSHNPALVKALLRQQGINPGRVRKKSAGWPSLAPSVKPVEIALFTRQLATLLKAGI
ALLQALDIIAEGFENRHMRTLVQSLKQEIAAGSSLSVALQKQPRYFDELYCNLIAAGEQAGALEALLERVATHLEKSEQL
KARIKKAMTYPMTVLAVATLVSAILLIHVVPQFQGLFAGVDAQLPGFTLAVISLSEFMQHNGWILILAAGTGFAGLRKAY
RSSTGFRHWLDASLLKAPVAGTLLKKSALARYARTLSTTFAAGVPLVQALDSVAGATGNGLFKQAINRMRHDVSTGTQLN
ESMAVSGLFPGMAIQMTAIGEESGTLDTMLEKVASHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVLAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=719791 NVB75_RS15495 WP_258348190.1 3415767..3416975(+) (pilC) [Pseudomonas sp. CBS]
ATGAATGATGTTTCAGCGATCTATACCTGGGAAGGCGTCAACCGCAACGGGCGCAAGGTCTCGGGAGAAACCAGCAGTCA
CAACCCTGCACTGGTCAAAGCACTGTTGCGTCAACAAGGCATCAACCCTGGCCGCGTACGCAAAAAATCCGCGGGCTGGC
CAAGTCTTGCTCCGTCGGTCAAACCCGTGGAGATTGCCCTCTTCACCCGCCAGCTGGCGACGCTCTTAAAAGCCGGCATC
GCGCTTCTGCAAGCACTGGATATCATCGCCGAAGGCTTCGAAAACCGGCACATGCGCACACTGGTACAAAGCTTGAAGCA
GGAGATCGCCGCTGGCAGCAGCCTGTCTGTCGCGTTGCAGAAACAGCCCCGATACTTCGACGAACTGTACTGCAACCTGA
TTGCGGCGGGGGAGCAGGCGGGCGCGCTCGAAGCGCTGTTGGAACGAGTCGCCACCCACCTGGAAAAAAGCGAGCAGTTG
AAAGCCAGAATCAAAAAGGCGATGACCTATCCCATGACGGTGCTGGCAGTCGCCACCCTTGTCAGTGCGATCCTGCTGAT
TCACGTTGTGCCCCAGTTCCAGGGCCTGTTTGCCGGCGTCGACGCGCAGCTGCCGGGCTTTACCTTGGCGGTCATCAGCC
TGTCGGAGTTCATGCAACACAACGGGTGGATACTGATTTTGGCCGCGGGCACCGGTTTCGCAGGACTGCGCAAAGCCTAT
CGCTCGTCCACAGGCTTTCGCCATTGGCTCGATGCCAGTTTGTTGAAAGCACCGGTGGCAGGCACACTGCTGAAAAAATC
GGCGCTCGCCCGCTACGCCCGCACGCTCTCGACTACCTTTGCAGCCGGCGTACCCCTGGTGCAAGCATTGGACTCCGTGG
CCGGCGCTACGGGTAATGGACTGTTCAAACAGGCAATCAATCGTATGCGGCACGACGTATCAACCGGAACGCAATTAAAT
GAATCCATGGCCGTAAGCGGCCTGTTTCCAGGCATGGCGATCCAGATGACCGCGATCGGCGAGGAGTCGGGCACCCTCGA
CACCATGCTGGAAAAAGTCGCCAGCCACTACGAGGCCGACGTCGACAACCTGGTGGATAACCTCACGAGCCTGATGGAGC
CGCTGATCATGGTGGTACTCGGGGGCATCGTCGGGGCATTGGTACTCGCCATGTACCTGCCGATCTTTCAACTCGGTACC
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.705

98.756

0.599
  pilC Acinetobacter baylyi ADP1

53.634

99.254

0.532
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Legionella pneumophila strain ERS1305867

48.608

98.259

0.478
  pilC Vibrio cholerae strain A1552

40.561

97.512

0.396
  pilG Neisseria gonorrhoeae MS11

40.355

98.01

0.396
  pilG Neisseria meningitidis 44/76-A

39.594

98.01

0.388
  pilC Vibrio campbellii strain DS40M4

39.796

97.512

0.388
  pilC Thermus thermophilus HB27

37.157

99.751

0.371