Detailed information NTG0719792

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NVB75_RS15500
• Genome accession: NZ_CP102929
• Coordinates: 3416972..3417850 (+)
• Length: 292 a.a.
• NCBI ID: WP_375378922.1
• Uniprot ID: -
• Organism: Pseudomonas sp. CBS
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3411972..3422850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVB75_RS15470 (NVB75_15470)	nadC	3412119..3412967 (+)	849	WP_010175009.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NVB75_RS15475 (NVB75_15475)	-	3413102..3413407 (-)	306	WP_076016485.1	DUF6388 family protein	-
NVB75_RS15485 (NVB75_15485)	-	3413656..3415065 (-)	1410	WP_258348186.1	O-antigen ligase	-
NVB75_RS15490 (NVB75_15490)	-	3415152..3415565 (-)	414	WP_275711403.1	pilin	-
NVB75_RS15495 (NVB75_15495)	pilC	3415767..3416975 (+)	1209	WP_258348190.1	type II secretion system F family protein	Machinery gene
NVB75_RS15500 (NVB75_15500)	pilD	3416972..3417850 (+)	879	WP_375378922.1	prepilin peptidase	Machinery gene
NVB75_RS15505 (NVB75_15505)	coaE	3417847..3418470 (+)	624	WP_258348192.1	dephospho-CoA kinase	-
NVB75_RS15510 (NVB75_15510)	yacG	3418467..3418667 (+)	201	WP_063027056.1	DNA gyrase inhibitor YacG	-
NVB75_RS15515 (NVB75_15515)	-	3418664..3418879 (-)	216	WP_258348194.1	hypothetical protein	-
NVB75_RS15520 (NVB75_15520)	-	3418945..3419634 (-)	690	WP_258348195.1	energy-coupling factor ABC transporter permease	-
NVB75_RS15525 (NVB75_15525)	-	3419631..3420098 (-)	468	WP_258348196.1	FAD/FMN-containing dehydrogenase	-
NVB75_RS15530 (NVB75_15530)	-	3420201..3420830 (+)	630	WP_008437312.1	DUF1780 domain-containing protein	-
NVB75_RS15535 (NVB75_15535)	-	3420920..3421093 (+)	174	WP_076016477.1	DUF3094 family protein	-
NVB75_RS15540 (NVB75_15540)	-	3421154..3422452 (+)	1299	WP_258348198.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32340.61 Da
• Isoelectric Point: 7.9750

>NTDB_id=719792 NVB75_RS15500 WP_375378922.1 3416972..3417850(+) (pilD) [Pseudomonas sp. CBS]
MSTPLTEILVYQPWFFVSGALLLGLIVGSFINVLVWRLPKMLEREWRAQAHEVLGLPAEPITAPYNLMRPNSCCPHCNHP
IRPWENIPLLSYLLLRGRCSSCHSPISARYPFTELACGLISAVVAWHFGFGWAAGAVMVLSWGLLAMSLIDVDHQLLPDV
LVLPLLWLGLILNSFGVFVSLPDALWGTVAGYMSLWSVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPMTLLLSSL
VGVMGGLILLRLRKAQVSVPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 879 bp

>NTDB_id=719792 NVB75_RS15500 WP_375378922.1 3416972..3417850(+) (pilD) [Pseudomonas sp. CBS]
TTGAGCACGCCACTGACTGAGATCCTTGTTTATCAGCCATGGTTTTTTGTATCAGGCGCGTTGCTGCTGGGCTTGATTGT
CGGCAGCTTTATCAACGTGCTGGTTTGGCGCCTGCCGAAGATGCTGGAGCGTGAATGGCGAGCCCAGGCCCATGAAGTCC
TTGGCCTTCCCGCCGAGCCCATCACGGCGCCCTATAACCTGATGCGCCCCAACTCCTGTTGCCCACACTGCAACCACCCG
ATTCGCCCTTGGGAGAATATTCCGCTGCTCAGTTACCTACTGCTCAGAGGGCGCTGCTCAAGTTGCCATTCACCTATCAG
CGCGCGTTACCCCTTCACCGAATTGGCGTGCGGGTTGATCTCGGCGGTTGTCGCCTGGCATTTCGGTTTCGGCTGGGCAG
CCGGCGCGGTGATGGTGTTGAGTTGGGGCTTGCTGGCGATGAGCCTGATTGACGTAGACCACCAACTGCTGCCGGATGTG
CTGGTGCTGCCGTTGCTGTGGCTGGGCCTGATCCTCAACAGCTTTGGCGTTTTTGTGTCATTGCCCGATGCGCTGTGGGG
CACCGTGGCCGGGTACATGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGAATGGGTTACG
GGGATTTCAAGCTTCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGCTGCTGTCGTCCCTG
GTGGGCGTGATGGGCGGCCTGATTCTATTGCGTCTGCGCAAAGCCCAAGTGTCGGTTCCAATGCCTTTTGGTCCGTATCT
GGCAATTGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.643	97.945	0.555
pilD	Vibrio campbellii strain DS40M4	52.632	97.603	0.514
pilD	Acinetobacter nosocomialis M2	50.187	91.438	0.459
pilD	Acinetobacter baumannii D1279779	50.187	91.438	0.459
pilD	Neisseria gonorrhoeae MS11	48.148	92.466	0.445