Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RG805_RS05740 Genome accession   NZ_CP102626
Coordinates   1129345..1130592 (+) Length   415 a.a.
NCBI ID   WP_003766840.1    Uniprot ID   -
Organism   Listeria innocua strain 2012L-5520     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1124345..1135592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG805_RS05720 (MXK52_05715) yfmH 1125509..1126795 (+) 1287 WP_070024552.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RG805_RS05725 (MXK52_05720) ymfI 1126895..1127626 (+) 732 WP_003766839.1 elongation factor P 5-aminopentanone reductase -
  RG805_RS05730 (MXK52_05725) - 1127675..1128610 (+) 936 WP_003762172.1 RodZ family helix-turn-helix domain-containing protein -
  RG805_RS05735 (MXK52_05730) pgsA 1128700..1129278 (+) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RG805_RS05740 (MXK52_05735) cinA 1129345..1130592 (+) 1248 WP_003766840.1 competence/damage-inducible protein A Machinery gene
  RG805_RS05745 (MXK52_05740) recA 1130862..1131908 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  RG805_RS05750 (MXK52_05745) rny 1132209..1133771 (+) 1563 WP_003721904.1 ribonuclease Y -
  RG805_RS05755 (MXK52_05750) - 1133887..1134384 (+) 498 WP_003766842.1 GNAT family N-acetyltransferase -
  RG805_RS05760 (MXK52_05755) - 1134389..1135192 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  RG805_RS05765 (MXK52_05760) - 1135209..1135571 (+) 363 WP_003762190.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45586.81 Da        Isoelectric Point: 4.7936

>NTDB_id=718171 RG805_RS05740 WP_003766840.1 1129345..1130592(+) (cinA) [Listeria innocua strain 2012L-5520]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKNVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDALHMNKITDYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSESAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLEKNISISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QIIKEYGVVSSECAKEMANNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=718171 RG805_RS05740 WP_003766840.1 1129345..1130592(+) (cinA) [Listeria innocua strain 2012L-5520]
ATGGCAAGCGCGGAAATTATTGCAGTAGGAACAGAATTATTACTAGGACAAATCGTGAACTCTAATGCTGCTTTTATTTC
AGAAGAGTTAGCAGCTAACGGGATTTATGTCTACCATCACACTGTTGTTGGTGACAACCCTAAACGTTTAAAAAATGTAA
TAGAAATTGCTGAGAAACGCAGTGATATTCTCATTTTCACGGGTGGATTAGGTCCTACAGAAGACGATATTACGAAACAA
ATTCTAGCAGAACATCTACAAAAAAACTTAGTAGAAGATGCGCTTCATATGAACAAAATCACGGATTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGTT
TTGCTGCAGGAATGTTCTTAAAAGAGAATAATCATACGTATATCTTACTTCCAGGTCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTCAGTGAAAGTGCTGAAAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGCATTGGAGAATCGCAATTAGCAGCAGATTTAAACGATATGATTTTAGCTCAAGTAAATCCTACTATTGCTACATATG
CAGGTGATAATGAAGTGGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACA
GAACAAGAAATTTTACGCAGAGATGGAACTTTTTTATACGGTTATGGCGAGGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATTTCTATTTCGGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGCATGGTCACATACAGCGAAGAAACGAAACAATCTATTCTTGAAGTCTCACCT
CAAATAATAAAAGAATATGGAGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAATAATGTCAGCAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACTGGCGTTGCAGGTCCAGACAGTCTAGAAGGACATCCCGCAGGTACTATTTGGATAGGCT
TACATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGGGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTGATTAAACAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.856

98.554

0.501
  cinA Streptococcus mitis SK321

48.565

100

0.489
  cinA Streptococcus pneumoniae TIGR4

48.095

100

0.487
  cinA Streptococcus pneumoniae Rx1

47.857

100

0.484
  cinA Streptococcus pneumoniae R6

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.971

100

0.484
  cinA Streptococcus mutans UA159

48.077

100

0.482
  cinA Streptococcus pneumoniae D39

47.619

100

0.482
  cinA Streptococcus suis isolate S10

39.806

99.277

0.395