Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NT239_RS06895 Genome accession   NZ_CP102611
Coordinates   1512436..1513659 (+) Length   407 a.a.
NCBI ID   WP_373976471.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1507436..1518659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS06875 (NT239_06875) rpsP 1507900..1508145 (-) 246 WP_348946004.1 30S ribosomal protein S16 -
  NT239_RS06880 (NT239_06880) ffh 1508245..1509588 (-) 1344 WP_373976468.1 signal recognition particle protein -
  NT239_RS06885 (NT239_06885) - 1509670..1510476 (+) 807 WP_373976469.1 inner membrane protein YpjD -
  NT239_RS06890 (NT239_06890) pilF 1510712..1512418 (+) 1707 WP_373976470.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NT239_RS06895 (NT239_06895) pilC 1512436..1513659 (+) 1224 WP_373976471.1 type II secretion system F family protein Machinery gene
  NT239_RS06900 (NT239_06900) pilD 1513659..1514519 (+) 861 WP_373976472.1 A24 family peptidase Machinery gene
  NT239_RS06905 (NT239_06905) coaE 1514523..1515149 (+) 627 WP_373976473.1 dephospho-CoA kinase -
  NT239_RS06910 (NT239_06910) zapD 1515175..1515933 (+) 759 WP_373976474.1 cell division protein ZapD -
  NT239_RS06915 (NT239_06915) - 1515930..1516127 (+) 198 WP_373976475.1 DNA gyrase inhibitor YacG -
  NT239_RS06920 (NT239_06920) - 1516320..1517069 (+) 750 WP_373976476.1 GNAT family N-acetyltransferase -
  NT239_RS06925 (NT239_06925) - 1517128..1517901 (+) 774 WP_373976477.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44418.36 Da        Isoelectric Point: 9.9142

>NTDB_id=718144 NT239_RS06895 WP_373976471.1 1512436..1513659(+) (pilC) [Chitinibacter sp. SCUT-21]
MAVKAKSPAAKEFAFRWEGKDRTNKIVKGEMRASGENVVKSTLRRQGINVTSVKKVRLGAGRKITELDIAMFTRQLATML
KSGVPLLTAFDIVAKGHSNPSVTKLLMEIKTDIETGSSLTQAFRKHPNQFDNLYCNLVQAGEQAGILDALLARLATYKEK
ILAVKKKIKSAMFYPTAVIVAAFVITAVIMIFVIPAFKELFSSFGADLPGPTLLVMAISDFFVDYWYIIFGGIFGGIYLF
LQAWKKSEKIQFFMDRLLLKLPIFGEIVRNATIARWTRTLATMFAAGVPLVESLESVGGASGNIVYKLATQKIQSEVSTG
TSLTSAMQNANVFPNMVLQMTSIGEESGSLDAMLSKVADYFEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVVAMYLPIF
KMGAAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=718144 NT239_RS06895 WP_373976471.1 1512436..1513659(+) (pilC) [Chitinibacter sp. SCUT-21]
ATGGCCGTTAAAGCAAAAAGTCCCGCAGCCAAAGAGTTTGCATTTCGCTGGGAAGGTAAAGATAGAACTAATAAAATTGT
TAAAGGCGAGATGCGCGCAAGCGGTGAAAATGTAGTCAAAAGCACCCTGCGACGCCAAGGGATCAACGTTACAAGTGTAA
AAAAAGTTCGTCTTGGCGCCGGCAGAAAGATCACTGAGCTTGATATTGCCATGTTTACACGCCAACTCGCCACCATGCTA
AAGTCTGGCGTACCCCTGCTAACAGCCTTCGACATTGTAGCCAAAGGCCATAGCAATCCATCAGTAACCAAGCTACTAAT
GGAAATCAAGACCGATATTGAAACCGGGTCTTCACTAACACAAGCCTTTAGAAAACACCCCAATCAGTTCGACAACCTGT
ACTGCAATCTTGTACAGGCAGGGGAGCAGGCCGGTATTTTAGATGCCCTTCTAGCACGCCTTGCCACTTATAAAGAAAAA
ATTCTGGCCGTTAAAAAGAAAATCAAGTCAGCGATGTTTTATCCTACGGCAGTCATTGTTGCGGCCTTCGTTATCACGGC
GGTGATTATGATTTTTGTGATTCCAGCCTTTAAAGAACTTTTCTCCAGCTTTGGCGCCGACCTACCTGGGCCGACACTCT
TAGTCATGGCCATTTCCGACTTCTTTGTTGATTACTGGTACATCATTTTTGGCGGAATTTTTGGAGGCATTTATCTTTTT
CTCCAAGCCTGGAAAAAATCTGAAAAAATTCAATTCTTTATGGATAGGTTGTTACTAAAACTCCCCATTTTTGGCGAAAT
TGTTCGCAATGCGACCATTGCCCGTTGGACTAGAACTTTAGCAACGATGTTTGCTGCCGGCGTCCCGCTGGTTGAATCGC
TTGAGTCGGTAGGAGGCGCATCAGGGAATATCGTCTACAAATTAGCAACCCAGAAAATACAATCGGAAGTTAGCACTGGC
ACAAGCTTGACTAGCGCCATGCAGAATGCCAATGTATTTCCAAATATGGTTTTGCAAATGACGTCAATTGGGGAAGAGTC
AGGCTCACTGGACGCAATGCTAAGCAAAGTCGCCGACTACTTTGAAGAGGAGGTCGATAATGCAGTAGAAGCGCTATCAA
GTTTAATGGAGCCGATCATTATGGTCGTTCTTGGCACACTAATCGGGGGGCTTGTTGTTGCAATGTACCTACCAATCTTC
AAAATGGGCGCGGCGGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.788

97.297

0.523
  pilG Neisseria gonorrhoeae MS11

53.133

98.034

0.521
  pilG Neisseria meningitidis 44/76-A

52.632

98.034

0.516
  pilC Pseudomonas stutzeri DSM 10701

51.372

98.526

0.506
  pilC Acinetobacter baumannii D1279779

51.385

97.543

0.501
  pilC Acinetobacter baylyi ADP1

51.134

97.543

0.499
  pilC Vibrio cholerae strain A1552

39.95

97.789

0.391
  pilC Vibrio campbellii strain DS40M4

37.688

97.789

0.369