Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH70_RS25385 Genome accession   NZ_CP117438
Coordinates   5601173..5601700 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A191Z107
Organism   Pseudomonas fluorescens strain FP2327     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5596173..5606700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS25360 (PSH70_25355) - 5596653..5597408 (-) 756 WP_069551255.1 S9 family peptidase -
  PSH70_RS25365 (PSH70_25360) - 5597398..5598507 (-) 1110 WP_053258265.1 DUF3182 family protein -
  PSH70_RS25370 (PSH70_25365) - 5598750..5599313 (+) 564 WP_053258266.1 cysteine hydrolase family protein -
  PSH70_RS25375 (PSH70_25370) tam 5599335..5600096 (-) 762 WP_053258267.1 trans-aconitate 2-methyltransferase -
  PSH70_RS25380 (PSH70_25375) - 5600198..5601106 (+) 909 WP_053258268.1 LysR family transcriptional regulator -
  PSH70_RS25385 (PSH70_25380) ssb 5601173..5601700 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  PSH70_RS25390 (PSH70_25385) - 5601710..5603104 (-) 1395 WP_053258269.1 MFS transporter -
  PSH70_RS25395 (PSH70_25390) uvrA 5603283..5606117 (+) 2835 WP_069553225.1 excinuclease ABC subunit UvrA Machinery gene
  PSH70_RS25400 (PSH70_25395) bfr 5606182..5606646 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=718144 PSH70_RS25385 WP_010467282.1 5601173..5601700(-) (ssb) [Pseudomonas fluorescens strain FP2327]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=718144 PSH70_RS25385 WP_010467282.1 5601173..5601700(-) (ssb) [Pseudomonas fluorescens strain FP2327]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGATCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCGCCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191Z107

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491