Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   PSH70_RS25395 Genome accession   NZ_CP117438
Coordinates   5603283..5606117 (+) Length   944 a.a.
NCBI ID   WP_069553225.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FP2327     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5598283..5611117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS25370 (PSH70_25365) - 5598750..5599313 (+) 564 WP_053258266.1 cysteine hydrolase family protein -
  PSH70_RS25375 (PSH70_25370) tam 5599335..5600096 (-) 762 WP_053258267.1 trans-aconitate 2-methyltransferase -
  PSH70_RS25380 (PSH70_25375) - 5600198..5601106 (+) 909 WP_053258268.1 LysR family transcriptional regulator -
  PSH70_RS25385 (PSH70_25380) ssb 5601173..5601700 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  PSH70_RS25390 (PSH70_25385) - 5601710..5603104 (-) 1395 WP_053258269.1 MFS transporter -
  PSH70_RS25395 (PSH70_25390) uvrA 5603283..5606117 (+) 2835 WP_069553225.1 excinuclease ABC subunit UvrA Machinery gene
  PSH70_RS25400 (PSH70_25395) bfr 5606182..5606646 (-) 465 WP_015886133.1 bacterioferritin -
  PSH70_RS25405 (PSH70_25400) - 5606802..5608247 (-) 1446 WP_053258272.1 catalase -
  PSH70_RS25410 (PSH70_25405) rplQ 5608491..5608877 (-) 387 WP_003176402.1 50S ribosomal protein L17 -
  PSH70_RS25415 (PSH70_25410) rpoA 5608919..5609920 (-) 1002 WP_003176403.1 DNA-directed RNA polymerase subunit alpha -
  PSH70_RS25420 (PSH70_25415) rpsD 5609943..5610563 (-) 621 WP_003210056.1 30S ribosomal protein S4 -
  PSH70_RS25425 (PSH70_25420) rpsK 5610582..5610971 (-) 390 WP_002555466.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104213.36 Da        Isoelectric Point: 7.3429

>NTDB_id=718145 PSH70_RS25395 WP_069553225.1 5603283..5606117(+) (uvrA) [Pseudomonas fluorescens strain FP2327]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKG
EHLSVFEELRAQGFVRARINGKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGDLTLAEGAIRGWDRRNVYYFQML
GSLASHYKFSLEVPFNQLPAEQQKVILHGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL
STQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSLD
RSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKMALHLKGARGNNLRNVDLEIPLGLLTCVTGV
SGSGKSTLINNTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEARVFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLLARDKA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=718145 PSH70_RS25395 WP_069553225.1 5603283..5606117(+) (uvrA) [Pseudomonas fluorescens strain FP2327]
TTGGACAAGATCCTGATTCGTGGGGCTAGAACCCACAACCTGAAGAACATCGACCTGACCCTGCCCCGGGACAAACTGAT
CGTCATCACCGGCTTGTCCGGGTCCGGCAAATCGTCCCTGGCGTTCGACACGCTGTATGCCGAAGGTCAACGTCGCTATG
TAGAGTCACTGTCGGCGTATGCCCGGCAATTCCTGTCGATGATGGAAAAACCTGACGTCGACACCATCGAAGGTTTGTCG
CCGGCGATTTCCATCGAGCAGAAGTCGACTTCCCATAACCCACGCTCCACCGTGGGCACCATCACCGAAATTTACGACTA
CCTGCGTCTGCTGTATGCGCGCGTAGGCATTCCGCGCTGCCCGGACCACGACATTCCCCTGGAAGCCCAGACTGTCAGCC
AAATGGTTGACCTGGTGCTGGCCCAGCCTGAGGGCGCCAAGCTGATGCTGCTGGCGCCGGTCATTCGCGAGCGCAAGGGC
GAACACCTTTCGGTCTTCGAGGAACTGCGCGCCCAGGGTTTCGTGCGCGCGCGCATCAACGGCAAGCTCTATGAGCTGGA
CGAAGCGCCGAAGCTCGACAAGCAGAAAAAGCATTCGATTGATGTAGTGGTCGATCGCTTCAAAGTGCGCGCCGACTTGC
AGCAGCGTTTGGCGGAATCGTTCGAAACCGCACTGAAGCTGGCGGATGGCATTGCACTGGTCGCGCCGATGGATGACGAG
CCGGGTGAAGAGATCATCTTCTCCGCACGTTTCGCCTGCCCGATCTGCGGCCACGCCATCAGCGAACTCGAACCCAAGCT
GTTTTCGTTCAACAACCCGGCTGGCGCCTGCCCGACCTGTGATGGCCTGGGGGTTAAACAGTTCTTCGACATCAAGCGCC
TGGTCAATGGTGACCTGACATTGGCGGAGGGTGCCATACGCGGCTGGGACAGGCGTAACGTCTATTACTTCCAGATGCTC
GGGTCATTGGCGTCCCACTATAAGTTCAGCCTGGAAGTGCCATTCAACCAACTGCCGGCAGAACAGCAGAAAGTCATCCT
GCACGGCAGTGGTTCGCAGAACGTCGACTTCAAATACCTGAACGACCGTGGCGATATCGTCAAACGCTCGCACCCGTTCG
AGGGCATCGTGCCGAACCTGGAGCGGCGCTATCGCGAAACCGAATCGGCGAGCGTGCGCGAGGAGCTGGCCAAGTTCCTC
AGTACCCAACCGTGCCCGGACTGCCGGGGCACTCGCCTGCGTCGCGAGGCGCGCCATGTGTGGGTCGGTGAGAAGACCTT
GCCGGCGGTGACCAACCTGCCGATCGGCGATGCCTGCGAATACTTTGGTGTGCTCAAGCTGACCGGACGTCGTGGGGAAA
TTGCCGACAAGATCCTCAAGGAAATCCGCGAGCGCTTGCAGTTCCTGGTCAACGTTGGCCTGGATTATCTGTCCCTGGAT
CGCAGCGCCGACACGCTGTCTGGCGGTGAAGCCCAGCGGATTCGGTTGGCCAGCCAGATTGGTGCCGGCCTGGTGGGCGT
TTTGTACATCCTTGATGAACCGTCGATTGGCTTACATCAACGCGACAATGACCGCCTTCTGGGAACGCTTAAACACCTGC
GGGATATCGGTAACACCGTGATCGTGGTCGAGCATGATGAAGACGCGATTCGCCTGGCGGATTATGTGGTCGACATTGGC
CCGGGTGCAGGTGTGCACGGTGGGCACATCGTCGCCGAAGGCACACCTGCCGAAGTGATGGCTCATCCGGATTCGCTGAC
CGGCAAGTACCTGTCCGGCCGGGTGAAGATCGAAGTGCCCGCCAAGCGTACGCCGCGTAACAAAAAGATGGCGTTGCACC
TCAAGGGAGCGCGCGGCAACAACCTGCGCAATGTGGACCTGGAAATCCCTCTCGGCCTGCTGACCTGTGTGACCGGCGTT
TCCGGCTCTGGCAAGTCGACGCTGATCAACAACACGCTGTTTCCGCTGAGTGCCACCGCCCTGAATGGTGCCACCACGCT
GGAGGCCGCTGCACACGACAGCATCAAAGGCCTGGAACACCTGGACAAGGTGGTCGATATCGACCAAAGCCCGATTGGCC
GCACACCGCGTTCCAACCCGGCGACCTATACCGGGTTGTTCACACCGATACGCGAACTGTTTGCGGGTGTGCCGGAGTCT
CGCTCACGCGGTTACGGGCCTGGCCGGTTCTCGTTCAACGTGAAGGGCGGGCGCTGCGAAGCGTGCCAGGGCGATGGCCT
GATCAAGGTTGAGATGCACTTTCTGCCGGACATCTACGTGCCGTGCGATGTGTGCAAGAGCAAGCGTTATAACCGCGAAA
CCCTGGAGATCAAGTACAAGGGCAAAAGCATCCACGAAACCCTGGAGATGACCATCGAGGAAGCCCGGGTGTTCTTCGAC
GCGGTGCCTGCATTGGCGCGCAAGCTGCAGACATTGATGGATGTAGGCCTGTCGTACATCAAGCTGGGGCAGTCGGCGAC
CACCTTGTCCGGTGGTGAGGCGCAGCGAGTGAAGCTGTCTCGCGAGCTGTCCAAGCGCGATACCGGCAAGACGCTGTACA
TCCTCGATGAGCCGACTACGGGCTTGCACTTTGCCGATATTCAGCAATTGCTGGACGTGCTGCACCGCTTGCGTGACCAC
GGCAACACAGTGGTGGTGATCGAGCACAACCTTGATGTGATCAAGACCGCCGACTGGCTGGTGGACCTCGGGCCGGAAGG
CGGCTCCAAGGGTGGCCAGATCATCGCGGTGGGTACGCCGGAACAGGTCTCGGAGATGCCGCAGTCACATACCGGCTACT
ACTTGAAGCCGTTATTGGCGCGCGACAAAGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.34

99.576

0.571
  uvrA Streptococcus pneumoniae TIGR4

57.34

99.576

0.571
  uvrA Streptococcus pneumoniae D39

57.34

99.576

0.571