Detailed information NTG0718145

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NT239_RS06900
• Genome accession: NZ_CP102611
• Coordinates: 1513659..1514519 (+)
• Length: 286 a.a.
• NCBI ID: WP_373976472.1
• Uniprot ID: -
• Organism: Chitinibacter sp. SCUT-21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1508659..1519519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NT239_RS06885 (NT239_06885)	-	1509670..1510476 (+)	807	WP_373976469.1	inner membrane protein YpjD	-
NT239_RS06890 (NT239_06890)	pilF	1510712..1512418 (+)	1707	WP_373976470.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NT239_RS06895 (NT239_06895)	pilC	1512436..1513659 (+)	1224	WP_373976471.1	type II secretion system F family protein	Machinery gene
NT239_RS06900 (NT239_06900)	pilD	1513659..1514519 (+)	861	WP_373976472.1	A24 family peptidase	Machinery gene
NT239_RS06905 (NT239_06905)	coaE	1514523..1515149 (+)	627	WP_373976473.1	dephospho-CoA kinase	-
NT239_RS06910 (NT239_06910)	zapD	1515175..1515933 (+)	759	WP_373976474.1	cell division protein ZapD	-
NT239_RS06915 (NT239_06915)	-	1515930..1516127 (+)	198	WP_373976475.1	DNA gyrase inhibitor YacG	-
NT239_RS06920 (NT239_06920)	-	1516320..1517069 (+)	750	WP_373976476.1	GNAT family N-acetyltransferase	-
NT239_RS06925 (NT239_06925)	-	1517128..1517901 (+)	774	WP_373976477.1	lysophospholipid acyltransferase family protein	-
NT239_RS06930 (NT239_06930)	-	1517852..1518676 (-)	825	WP_373976478.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
NT239_RS06935 (NT239_06935)	rplQ	1518745..1519125 (-)	381	WP_180306033.1	50S ribosomal protein L17	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31167.98 Da
• Isoelectric Point: 7.1415

>NTDB_id=718145 NT239_RS06900 WP_373976472.1 1513659..1514519(+) (pilD) [Chitinibacter sp. SCUT-21]
MFEILTNPSYLIVCTALLGLFVGSFLNVVIHRLPIMIENSFRQECSVLQEGESIQSTIPFTTYNLAIPRSACPTCEHQIT
ALENIPVVSWLLLRGKCSQCKAPISKRYPLVELATALVSGGLAWHFGFSLQLFGALLFSWALISLILIDADTYLLPDAIT
LPLLWLGVLFNTQGIFTDLTSSVYGAIAGYLSLWSIYWAFKLATGKEGMGYGDFKLLAALGAWLGVSMLPAIILLSSFSG
AVIGIIMIAGAKRGWNKPMPFGPYLGIAGLLALIWGKDITQMLYGF

Nucleotide

• Length: 861 bp

>NTDB_id=718145 NT239_RS06900 WP_373976472.1 1513659..1514519(+) (pilD) [Chitinibacter sp. SCUT-21]
ATGTTTGAAATTTTGACAAATCCAAGTTATTTGATTGTTTGCACAGCTCTACTAGGCTTATTTGTTGGCAGCTTTCTCAA
CGTGGTCATCCATCGACTACCAATCATGATTGAAAACAGCTTTCGCCAAGAATGCTCAGTGCTTCAGGAGGGGGAATCAA
TACAATCGACCATCCCTTTTACAACATACAATCTAGCAATCCCACGTTCCGCATGCCCAACTTGCGAACATCAAATTACT
GCGCTGGAAAATATTCCAGTCGTCAGCTGGCTACTACTACGGGGCAAATGCAGCCAATGCAAAGCACCAATTAGCAAGCG
CTACCCCTTAGTTGAATTAGCTACAGCCCTAGTCTCGGGAGGGCTCGCATGGCATTTTGGTTTTAGCTTGCAGCTATTTG
GAGCACTTTTGTTTAGCTGGGCTCTTATTTCATTAATACTGATTGATGCAGATACTTATTTATTGCCAGATGCCATCACG
CTCCCCTTACTTTGGTTGGGGGTGCTCTTCAACACACAAGGTATTTTTACAGATCTAACAAGTTCAGTATATGGCGCAAT
AGCAGGGTATTTAAGTCTTTGGAGCATATACTGGGCATTTAAACTTGCCACAGGCAAAGAAGGAATGGGCTACGGGGACT
TCAAATTACTCGCCGCCCTCGGAGCCTGGCTAGGAGTTAGCATGCTGCCAGCAATTATTCTGCTCTCTTCATTTAGTGGG
GCAGTAATTGGCATCATTATGATCGCAGGTGCAAAACGCGGATGGAACAAGCCGATGCCATTCGGGCCATATCTTGGAAT
AGCCGGCTTATTAGCGCTAATATGGGGCAAAGATATCACTCAGATGCTGTACGGTTTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.815	94.406	0.517
pilD	Vibrio campbellii strain DS40M4	54.212	95.455	0.517
pilD	Acinetobacter baumannii D1279779	49.822	98.252	0.49
pilD	Acinetobacter nosocomialis M2	49.466	98.252	0.486
pilD	Neisseria gonorrhoeae MS11	50.193	90.559	0.455