Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRZ28_RS02360 Genome accession   NZ_CP102366
Coordinates   512286..513527 (-) Length   413 a.a.
NCBI ID   WP_268032075.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain BC16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507286..518527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ28_RS02330 (NRZ28_02330) - 508127..509311 (+) 1185 WP_268032071.1 tetratricopeptide repeat protein -
  NRZ28_RS02335 (NRZ28_02335) mutT 509320..509733 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  NRZ28_RS02340 (NRZ28_02340) yacG 509794..509988 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  NRZ28_RS02345 (NRZ28_02345) zapD 509998..510720 (-) 723 WP_268032072.1 cell division protein ZapD -
  NRZ28_RS02350 (NRZ28_02350) coaE 510758..511372 (-) 615 WP_268032073.1 dephospho-CoA kinase -
  NRZ28_RS02355 (NRZ28_02355) pilD 511391..512263 (-) 873 WP_268032074.1 prepilin peptidase Machinery gene
  NRZ28_RS02360 (NRZ28_02360) pilC 512286..513527 (-) 1242 WP_268032075.1 type II secretion system F family protein Machinery gene
  NRZ28_RS02365 (NRZ28_02365) pilB 513643..515349 (-) 1707 WP_268032076.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NRZ28_RS02370 (NRZ28_02370) - 515353..515817 (-) 465 WP_045788906.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NRZ28_RS02375 (NRZ28_02375) nadC 516139..516996 (-) 858 WP_268032077.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NRZ28_RS02380 (NRZ28_02380) - 517002..517472 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  NRZ28_RS02385 (NRZ28_02385) ampD 517619..518191 (+) 573 WP_268032078.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45479.63 Da        Isoelectric Point: 9.8637

>NTDB_id=716492 NRZ28_RS02360 WP_268032075.1 512286..513527(-) (pilC) [Aeromonas hydrophila strain BC16]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVNKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LTIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=716492 NRZ28_RS02360 WP_268032075.1 512286..513527(-) (pilC) [Aeromonas hydrophila strain BC16]
ATGGCAACGCTAACCCAGAAACAAAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAACAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTACAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGTGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAAGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATCCTGCTGCTGTTCGTCATTCCTCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCACCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCGTACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCGCGCTTCGCCCGCACCCTCTCCACTACCTTCTCCGCCGGTA
TCCCACTGGTGGATGCTCTGATCTCTGCGGCAGGCGCCTCTGGTAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTATTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCTACCATCTTTGAACAGGAGGTAGACGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTACTGGGGGTGCTGGTTGGCGGTATGGTGGTTGCC
ATGTATCTGCCCATCTTTAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

37.75

96.852

0.366