NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NRZ28_RS02355	Genome accession	NZ_CP102366
Coordinates	511391..512263 (-)	Length	290 a.a.
NCBI ID	WP_268032074.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain BC16
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 506391..517263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRZ28_RS02330 (NRZ28_02330)	-	508127..509311 (+)	1185	WP_268032071.1	tetratricopeptide repeat protein	-
NRZ28_RS02335 (NRZ28_02335)	mutT	509320..509733 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
NRZ28_RS02340 (NRZ28_02340)	yacG	509794..509988 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRZ28_RS02345 (NRZ28_02345)	zapD	509998..510720 (-)	723	WP_268032072.1	cell division protein ZapD	-
NRZ28_RS02350 (NRZ28_02350)	coaE	510758..511372 (-)	615	WP_268032073.1	dephospho-CoA kinase	-
NRZ28_RS02355 (NRZ28_02355)	pilD	511391..512263 (-)	873	WP_268032074.1	prepilin peptidase	Machinery gene
NRZ28_RS02360 (NRZ28_02360)	pilC	512286..513527 (-)	1242	WP_268032075.1	type II secretion system F family protein	Machinery gene
NRZ28_RS02365 (NRZ28_02365)	pilB	513643..515349 (-)	1707	WP_268032076.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRZ28_RS02370 (NRZ28_02370)	-	515353..515817 (-)	465	WP_045788906.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NRZ28_RS02375 (NRZ28_02375)	nadC	516139..516996 (-)	858	WP_268032077.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32582.91 Da Isoelectric Point: 6.7409

                                >NTDB_id=716491 NRZ28_RS02355 WP_268032074.1 511391..512263(-) (pilD) [Aeromonas hydrophila strain BC16]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQVEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=716491 NRZ28_RS02355 WP_268032074.1 511391..512263(-) (pilD) [Aeromonas hydrophila strain BC16]

ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTAATGATCGG

CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGTCGAATATCTCGGCTATTTCA

ATCCGGAAACACAGCCTCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGATCTGCCTGCCCCCATTGCGGCCACGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC

GGCCCGTTATCCCCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGCAACATACCCACCGGGCTGGGGCT

TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG

CTGACCCTGCCACTGCTGTGGGGTGGTCTGCTGTTCAATCTGACAGGGGGATTTGTACCGCTGGCCGATGCGGTTATCGG

TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCTTCGCTG

GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	49.817	94.138	0.469

Detailed information NTG0716491