Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY40_RS24605 Genome accession   NZ_CP102179
Coordinates   5473188..5474405 (+) Length   405 a.a.
NCBI ID   WP_030140253.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain B21-020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5468188..5479405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY40_RS24585 (LOY40_24585) - 5469523..5469822 (+) 300 WP_030140249.1 DUF2845 domain-containing protein -
  LOY40_RS24590 (LOY40_24590) - 5470138..5470491 (-) 354 WP_030140250.1 BON domain-containing protein -
  LOY40_RS24595 (LOY40_24595) - 5470836..5471258 (-) 423 WP_030140251.1 pilin -
  LOY40_RS24600 (LOY40_24600) pilB 5471485..5473185 (+) 1701 WP_258648293.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY40_RS24605 (LOY40_24605) pilC 5473188..5474405 (+) 1218 WP_030140253.1 type II secretion system F family protein Machinery gene
  LOY40_RS24610 (LOY40_24610) pilD 5474407..5475276 (+) 870 WP_258648294.1 A24 family peptidase Machinery gene
  LOY40_RS24615 (LOY40_24615) coaE 5475276..5475899 (+) 624 WP_030140255.1 dephospho-CoA kinase -
  LOY40_RS24620 (LOY40_24620) yacG 5475896..5476102 (+) 207 WP_030140256.1 DNA gyrase inhibitor YacG -
  LOY40_RS24625 (LOY40_24625) - 5476174..5476389 (-) 216 WP_030140257.1 hypothetical protein -
  LOY40_RS24630 (LOY40_24630) - 5476453..5477139 (-) 687 WP_030140258.1 energy-coupling factor ABC transporter permease -
  LOY40_RS24635 (LOY40_24635) - 5477211..5477624 (-) 414 WP_030140259.1 tautomerase family protein -
  LOY40_RS24640 (LOY40_24640) - 5477766..5478659 (+) 894 WP_258648295.1 LysR substrate-binding domain-containing protein -
  LOY40_RS24645 (LOY40_24645) - 5478727..5479353 (+) 627 WP_030140261.1 DUF1780 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44136.96 Da        Isoelectric Point: 10.0139

>NTDB_id=715305 LOY40_RS24605 WP_030140253.1 5473188..5474405(+) (pilC) [Pseudomonas alvandae strain B21-020]
MAVKAVKTDVYVWEGKDRKGTKMSGELTGQSPALIKAQLRKQGINPGKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDEVKQEVAAGNSFAAALRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPAAVVAVAAVVTSILLIKVVPQFESVFAGFGAKLPAFTLMVIGLSEFLQEWWWILLGGLVGGFFGVK
YALKRSQAFRDWRDKWLLKLPLVGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVILGVVVGGLVVAMYMPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=715305 LOY40_RS24605 WP_030140253.1 5473188..5474405(+) (pilC) [Pseudomonas alvandae strain B21-020]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTACGTGTGGGAAGGCAAGGACCGCAAAGGCACGAAAATGTCCGGCGAACT
GACCGGCCAGAGCCCGGCGCTGATCAAGGCGCAACTGCGCAAACAGGGTATCAATCCAGGCAAGGTGCGCAAGAAATCCA
CTTCGATATTCAGCAAGGGCAAGCGCATCAAGCCGTTGGACATCGCCCTCTTCACACGCCAGATGGCGACGATGCTCAAG
GCTGGCGTGCCGTTGCTGCAAGCGTTCGACATCATTGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAGGTCGCCGCCGGCAACAGCTTTGCTGCGGCGTTGCGCAAATGCCCGCAGTATTTCGATGAGTTGTATT
GCAACCTGGTGGACGCCGGCGAGCAGGCCGGTGCACTCGATACGCTGCTGGACCGGGTCGCGACCTACAAGGAAAAAAGC
GAGGCCCTCAAGGCCAAGATCAAGAAAGCCATGACGTATCCCGCGGCCGTGGTAGCTGTCGCGGCCGTGGTCACGAGCAT
CCTGCTGATCAAGGTCGTGCCGCAGTTCGAGTCGGTATTCGCAGGCTTTGGCGCGAAATTGCCGGCCTTCACGCTGATGG
TCATCGGCCTGTCGGAATTCTTGCAGGAATGGTGGTGGATACTGCTGGGTGGGTTGGTGGGTGGATTTTTCGGCGTGAAA
TATGCGCTGAAGCGCTCCCAGGCATTCCGTGACTGGCGGGACAAGTGGCTGCTCAAGCTGCCCCTGGTGGGCACCCTGAT
GTACAAGTCCGCCGTGGCTCGCTATGCCCGTACGCTGTCCACGACATTCGCCGCCGGCGTGCCGCTGGTCGAAGCCCTCG
ACTCGGTGTCGGGCGCCACCGGCAACGTGGTATTCAAGCGTGCGGTGCTTCGCATTCGACAAGACGTCTCGACCGGCATG
CAGCTGAATTTTTCCATGCGTGCCTCCGGCATCTTCCCCAACCTGGCGATCCAGATGACGGCCATTGGCGAGGAATCCGG
CGCGCTGGATGACATGCTCGACAAGGTGGCGAGTTTTTACGAAGCCGAAGTGGATAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGATCCTGGGGGTGGTCGTCGGTGGCCTGGTGGTTGCCATGTACATGCCCATCTTCCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

59.85

99.012

0.593
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilG Neisseria gonorrhoeae MS11

43.532

99.259

0.432
  pilC Vibrio campbellii strain DS40M4

43.687

97.778

0.427
  pilG Neisseria meningitidis 44/76-A

42.574

99.753

0.425
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Thermus thermophilus HB27

38.404

99.012

0.38