Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQZ93_RS09980 Genome accession   NZ_CP102141
Coordinates   2009238..2009651 (-) Length   137 a.a.
NCBI ID   WP_257115259.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1984527..2027148 2009238..2009651 within 0


Gene organization within MGE regions


Location: 1984527..2027148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS09825 (NQZ93_09825) - 1984527..1985039 (-) 513 WP_013730593.1 adenylate kinase -
  NQZ93_RS09835 (NQZ93_09835) - 1985866..1986270 (-) 405 WP_024390590.1 type II toxin-antitoxin system HicB family antitoxin -
  NQZ93_RS09840 (NQZ93_09840) - 1986330..1986515 (-) 186 WP_024376845.1 type II toxin-antitoxin system HicA family toxin -
  NQZ93_RS09845 (NQZ93_09845) - 1986698..1988056 (-) 1359 WP_024390589.1 peptidoglycan amidohydrolase family protein -
  NQZ93_RS09850 (NQZ93_09850) - 1988153..1988575 (-) 423 WP_079376569.1 phage holin family protein -
  NQZ93_RS09855 (NQZ93_09855) - 1988586..1988927 (-) 342 WP_024390584.1 hypothetical protein -
  NQZ93_RS09860 (NQZ93_09860) - 1988930..1989163 (-) 234 WP_024390585.1 hypothetical protein -
  NQZ93_RS09865 (NQZ93_09865) - 1989172..1993959 (-) 4788 WP_257115246.1 phage tail spike protein -
  NQZ93_RS09870 (NQZ93_09870) - 1993960..1994682 (-) 723 WP_257115247.1 phage tail protein -
  NQZ93_RS09875 (NQZ93_09875) - 1994685..1997834 (-) 3150 WP_257115248.1 phage tail tape measure protein -
  NQZ93_RS09880 (NQZ93_09880) - 1998142..1998561 (-) 420 WP_248017553.1 hypothetical protein -
  NQZ93_RS09885 (NQZ93_09885) - 1998573..1999148 (-) 576 WP_172081250.1 major tail protein -
  NQZ93_RS09890 (NQZ93_09890) - 1999161..1999484 (-) 324 WP_027972590.1 hypothetical protein -
  NQZ93_RS09895 (NQZ93_09895) - 1999481..1999834 (-) 354 WP_257115249.1 HK97 gp10 family phage protein -
  NQZ93_RS09900 (NQZ93_09900) - 1999831..2000130 (-) 300 WP_257115250.1 phage head closure protein -
  NQZ93_RS09905 (NQZ93_09905) - 2000117..2000398 (-) 282 WP_257115251.1 hypothetical protein -
  NQZ93_RS09910 (NQZ93_09910) - 2000401..2000784 (-) 384 WP_257115252.1 hypothetical protein -
  NQZ93_RS09915 (NQZ93_09915) - 2000796..2001962 (-) 1167 WP_257115253.1 phage major capsid protein -
  NQZ93_RS09920 (NQZ93_09920) - 2001959..2002537 (-) 579 WP_044682826.1 HK97 family phage prohead protease -
  NQZ93_RS09925 (NQZ93_09925) - 2002524..2003726 (-) 1203 WP_248019451.1 phage portal protein -
  NQZ93_RS09930 (NQZ93_09930) - 2003744..2003962 (-) 219 WP_044682825.1 hypothetical protein -
  NQZ93_RS09935 (NQZ93_09935) - 2003970..2005745 (-) 1776 WP_257115254.1 terminase large subunit -
  NQZ93_RS09940 (NQZ93_09940) - 2005738..2006127 (-) 390 WP_044675115.1 P27 family phage terminase small subunit -
  NQZ93_RS09945 (NQZ93_09945) - 2006237..2006569 (-) 333 WP_257115255.1 HNH endonuclease -
  NQZ93_RS09950 (NQZ93_09950) - 2006854..2007396 (-) 543 WP_257115256.1 site-specific integrase -
  NQZ93_RS09955 (NQZ93_09955) - 2007506..2007970 (-) 465 WP_222309853.1 hypothetical protein -
  NQZ93_RS09960 (NQZ93_09960) - 2008023..2008181 (-) 159 WP_257115257.1 hypothetical protein -
  NQZ93_RS09965 (NQZ93_09965) - 2008281..2008802 (-) 522 WP_257115258.1 hypothetical protein -
  NQZ93_RS09970 (NQZ93_09970) - 2008795..2008974 (-) 180 WP_024402321.1 hypothetical protein -
  NQZ93_RS09975 (NQZ93_09975) - 2008974..2009228 (-) 255 WP_044675109.1 hypothetical protein -
  NQZ93_RS09980 (NQZ93_09980) ssb 2009238..2009651 (-) 414 WP_257115259.1 single-stranded DNA-binding protein Machinery gene
  NQZ93_RS09985 (NQZ93_09985) - 2009641..2009850 (-) 210 WP_257115260.1 hypothetical protein -
  NQZ93_RS09990 (NQZ93_09990) - 2009937..2010143 (-) 207 Protein_1919 DUF3310 domain-containing protein -
  NQZ93_RS09995 (NQZ93_09995) - 2010143..2010382 (-) 240 WP_371318548.1 DUF1372 family protein -
  NQZ93_RS10000 (NQZ93_10000) - 2010445..2010930 (-) 486 WP_257115262.1 MazG-like family protein -
  NQZ93_RS10005 (NQZ93_10005) - 2010931..2011176 (-) 246 WP_044675103.1 hypothetical protein -
  NQZ93_RS10010 (NQZ93_10010) - 2011173..2011400 (-) 228 WP_257115263.1 hypothetical protein -
  NQZ93_RS10015 (NQZ93_10015) - 2011393..2012170 (-) 778 Protein_1924 DNA methyltransferase -
  NQZ93_RS10020 (NQZ93_10020) - 2012181..2013002 (-) 822 WP_257115265.1 ATP-binding protein -
  NQZ93_RS10025 (NQZ93_10025) - 2013003..2013749 (-) 747 WP_257115266.1 conserved phage C-terminal domain-containing protein -
  NQZ93_RS10030 (NQZ93_10030) - 2013712..2014323 (-) 612 WP_257115267.1 hypothetical protein -
  NQZ93_RS10035 (NQZ93_10035) dnaB 2014326..2015654 (-) 1329 WP_257115268.1 replicative DNA helicase -
  NQZ93_RS10040 (NQZ93_10040) - 2015802..2016035 (-) 234 WP_257115269.1 hypothetical protein -
  NQZ93_RS10045 (NQZ93_10045) - 2016032..2016319 (-) 288 WP_257115270.1 DNA-binding protein -
  NQZ93_RS10050 (NQZ93_10050) - 2016380..2017090 (-) 711 WP_257115271.1 ORF6C domain-containing protein -
  NQZ93_RS10055 (NQZ93_10055) - 2017147..2017578 (+) 432 WP_105207666.1 hypothetical protein -
  NQZ93_RS10060 (NQZ93_10060) - 2017578..2017907 (+) 330 WP_029185597.1 hypothetical protein -
  NQZ93_RS10065 (NQZ93_10065) - 2018019..2018150 (-) 132 WP_257115272.1 hypothetical protein -
  NQZ93_RS10070 (NQZ93_10070) - 2018153..2018338 (-) 186 WP_257115273.1 helix-turn-helix transcriptional regulator -
  NQZ93_RS10075 (NQZ93_10075) - 2018583..2018948 (+) 366 WP_257115274.1 helix-turn-helix domain-containing protein -
  NQZ93_RS10080 (NQZ93_10080) - 2018955..2019335 (+) 381 WP_029997220.1 ImmA/IrrE family metallo-endopeptidase -
  NQZ93_RS10085 (NQZ93_10085) - 2019388..2019792 (+) 405 WP_043033186.1 DUF4429 domain-containing protein -
  NQZ93_RS10090 (NQZ93_10090) - 2019917..2020987 (+) 1071 WP_257115275.1 site-specific integrase -
  NQZ93_RS10095 (NQZ93_10095) - 2021101..2026179 (-) 5079 WP_024390658.1 S8 family serine peptidase -
  NQZ93_RS10100 (NQZ93_10100) nusG 2026323..2026862 (-) 540 WP_024381162.1 transcription termination/antitermination protein NusG -
  NQZ93_RS10105 (NQZ93_10105) secE 2026972..2027148 (-) 177 WP_002940255.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15469.30 Da        Isoelectric Point: 4.8837

>NTDB_id=714864 NQZ93_RS09980 WP_257115259.1 2009238..2009651(-) (ssb) [Streptococcus suis strain DNR48]
MINNVVLIGRLTRDVELRYTPNNVAVGAFNLAVNRNFKNAAGDREADFINCVIWNKQAENLANWTKKGHLVGITGRIQTR
SYENQQGQRVYVTEVVAESFQILEKRDNSANYSSMDEQMPPGFSGQPMDISDDDLPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=714864 NQZ93_RS09980 WP_257115259.1 2009238..2009651(-) (ssb) [Streptococcus suis strain DNR48]
ATGATCAATAATGTTGTACTGATTGGTCGATTGACCAGAGATGTTGAACTACGCTACACACCTAATAATGTTGCAGTTGG
AGCCTTCAACCTGGCAGTCAACCGTAATTTTAAGAACGCTGCTGGCGACCGTGAAGCTGACTTTATCAATTGCGTTATTT
GGAACAAGCAGGCCGAGAACTTGGCAAATTGGACCAAGAAAGGTCATCTGGTTGGTATTACTGGACGAATCCAGACCAGA
AGCTATGAAAATCAGCAAGGACAACGTGTCTATGTGACCGAAGTAGTTGCAGAAAGTTTCCAGATTCTGGAAAAGCGTGA
CAATAGTGCTAACTATTCAAGTATGGACGAGCAAATGCCACCAGGGTTCAGCGGCCAGCCGATGGATATTTCTGACGATG
ATTTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.679
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.857

100

0.65
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

77.372

0.431
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.429

100

0.423
  ssbB/cilA Streptococcus mitis NCTC 12261

41.429

100

0.423
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.818

80.292

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.714

100

0.416
  ssbB/cilA Streptococcus pneumoniae D39

40.714

100

0.416
  ssbB/cilA Streptococcus pneumoniae R6

40.714

100

0.416
  ssbB/cilA Streptococcus mitis SK321

40.714

100

0.416