Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   NQZ97_RS08130 Genome accession   NZ_CP102136
Coordinates   1665813..1666475 (-) Length   220 a.a.
NCBI ID   WP_256787520.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1660813..1671475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS08125 (NQZ97_08125) comEC/celB 1663592..1665829 (-) 2238 WP_257110526.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NQZ97_RS08130 (NQZ97_08130) comEA/celA/cilE 1665813..1666475 (-) 663 WP_256787520.1 helix-hairpin-helix domain-containing protein Machinery gene
  NQZ97_RS08135 (NQZ97_08135) - 1666544..1667290 (-) 747 WP_100664857.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NQZ97_RS08140 (NQZ97_08140) - 1667439..1668884 (+) 1446 WP_043026933.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  NQZ97_RS08145 (NQZ97_08145) - 1669350..1670135 (+) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  NQZ97_RS08150 (NQZ97_08150) - 1670148..1671077 (+) 930 WP_256787521.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23471.06 Da        Isoelectric Point: 4.0751

>NTDB_id=714643 NQZ97_RS08130 WP_256787520.1 1665813..1666475(-) (comEA/celA/cilE) [Streptococcus suis strain M105052_S26]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFSQPQQSSSSQEQLEEVSTEESEEPSQLVVDVK
GAVAKPGIYYLDAGSRVNDAVEAAGGLTSQADSKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKNTNLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=714643 NQZ97_RS08130 WP_256787520.1 1665813..1666475(-) (comEA/celA/cilE) [Streptococcus suis strain M105052_S26]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGGCTGGCTTGCT
AATGGCGACATTTTTAATCTTCAGTCAACCAGCCAAGTCTGATCAGACAGGCCTGACTGATTTTTCACAGCCACAGCAAA
GTTCAAGTAGTCAGGAGCAGCTTGAAGAAGTCAGTACAGAAGAAAGCGAAGAGCCCAGCCAGCTAGTTGTTGATGTCAAA
GGAGCAGTAGCAAAGCCTGGCATTTACTATCTTGACGCAGGAAGTCGAGTCAATGACGCAGTCGAGGCAGCTGGCGGCTT
GACCAGTCAGGCAGACTCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTTGCCAGCACGACTGCCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACTAATCTAGTCAAT
CTCAACACGGCGACCGAGGCTGACCTGCAGACCATTTCGGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTTTCGGGCATCGGCGACAAGACCATGGAAAGCATTC
GGCCTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

48.018

100

0.495
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

48.018

100

0.495
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus pneumoniae D39

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus pneumoniae R6

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus mitis SK321

47.748

100

0.482
  comEA Streptococcus thermophilus LMD-9

58.025

73.636

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

39.171

98.636

0.386
  comEA Bacillus subtilis subsp. subtilis str. 168

39.713

95

0.377