Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   PP478_RS24585 Genome accession   NZ_CP116933
Coordinates   5294454..5295896 (-) Length   480 a.a.
NCBI ID   WP_003120852.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CUVET21-397     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5289454..5300896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP478_RS24555 (PP478_24535) - 5289780..5290895 (+) 1116 WP_003093880.1 glycosyltransferase family 4 protein -
  PP478_RS24560 (PP478_24540) - 5290888..5291649 (+) 762 WP_003093883.1 DUF2334 domain-containing protein -
  PP478_RS24565 (PP478_24545) - 5291646..5292647 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  PP478_RS24570 (PP478_24550) - 5292622..5292834 (-) 213 WP_003093886.1 hypothetical protein -
  PP478_RS24575 (PP478_24555) purU 5292884..5293735 (-) 852 WP_003093887.1 formyltetrahydrofolate deformylase -
  PP478_RS24580 (PP478_24560) mvaT 5293995..5294369 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  PP478_RS24585 (PP478_24565) sbcB 5294454..5295896 (-) 1443 WP_003120852.1 exodeoxyribonuclease I Machinery gene
  PP478_RS24590 (PP478_24570) - 5296121..5296858 (+) 738 WP_003093890.1 hypothetical protein -
  PP478_RS24595 (PP478_24575) - 5296896..5297693 (+) 798 WP_073660234.1 RDD family protein -
  PP478_RS24600 (PP478_24580) - 5297690..5298670 (+) 981 WP_003093893.1 stage II sporulation protein M -
  PP478_RS24605 (PP478_24585) - 5298657..5300228 (+) 1572 WP_003093894.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55491.79 Da        Isoelectric Point: 5.5542

>NTDB_id=714642 PP478_RS24585 WP_003120852.1 5294454..5295896(-) (sbcB) [Pseudomonas aeruginosa strain CUVET21-397]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=714642 PP478_RS24585 WP_003120852.1 5294454..5295896(-) (sbcB) [Pseudomonas aeruginosa strain CUVET21-397]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGTAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44