Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NP805_RS21530 Genome accession   NZ_CP101948
Coordinates   4599118..4600359 (+) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain FN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4594118..4605359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP805_RS21505 (NP805_21500) ampD 4594487..4595059 (-) 573 WP_169047635.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NP805_RS21510 (NP805_21505) - 4595209..4595679 (+) 471 WP_256685968.1 retropepsin-like aspartic protease -
  NP805_RS21515 (NP805_21510) nadC 4595684..4596541 (+) 858 WP_256685970.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NP805_RS21520 (NP805_21515) - 4596877..4597278 (+) 402 WP_256685972.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NP805_RS21525 (NP805_21520) tapB 4597282..4598989 (+) 1708 Protein_4159 PilB family type IVa pilus assembly ATPase TapB -
  NP805_RS21530 (NP805_21525) pilC 4599118..4600359 (+) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  NP805_RS21535 (NP805_21530) pilD 4600423..4601298 (+) 876 WP_256685974.1 A24 family peptidase Machinery gene
  NP805_RS21540 (NP805_21535) coaE 4601318..4601932 (+) 615 WP_256685976.1 dephospho-CoA kinase -
  NP805_RS21545 (NP805_21540) zapD 4601970..4602692 (+) 723 WP_256685978.1 cell division protein ZapD -
  NP805_RS21550 (NP805_21545) yacG 4602702..4602896 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  NP805_RS21555 (NP805_21550) - 4602939..4604267 (-) 1329 WP_076611830.1 IS4-like element ISAs30 family transposase -
  NP805_RS21560 (NP805_21555) mutT 4604412..4604819 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=713465 NP805_RS21530 WP_059113460.1 4599118..4600359(+) (pilC) [Aeromonas salmonicida strain FN1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=713465 NP805_RS21530 WP_059113460.1 4599118..4600359(+) (pilC) [Aeromonas salmonicida strain FN1]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GGGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACTACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATTGCCCGCAGCCATGAGAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCGGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCTCGCTTCATGCAGAATTGGTGGTATGTGATCTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTAAGAGCCTGGCGCGCGTCCCAGAAGGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAGCCCCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATATTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366