Detailed information NTG0713466

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NP805_RS21535
• Genome accession: NZ_CP101948
• Coordinates: 4600423..4601298 (+)
• Length: 291 a.a.
• NCBI ID: WP_256685974.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida strain FN1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4595423..4606298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP805_RS21515 (NP805_21510)	nadC	4595684..4596541 (+)	858	WP_256685970.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NP805_RS21520 (NP805_21515)	-	4596877..4597278 (+)	402	WP_256685972.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NP805_RS21525 (NP805_21520)	tapB	4597282..4598989 (+)	1708	Protein_4159	PilB family type IVa pilus assembly ATPase TapB	-
NP805_RS21530 (NP805_21525)	pilC	4599118..4600359 (+)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
NP805_RS21535 (NP805_21530)	pilD	4600423..4601298 (+)	876	WP_256685974.1	A24 family peptidase	Machinery gene
NP805_RS21540 (NP805_21535)	coaE	4601318..4601932 (+)	615	WP_256685976.1	dephospho-CoA kinase	-
NP805_RS21545 (NP805_21540)	zapD	4601970..4602692 (+)	723	WP_256685978.1	cell division protein ZapD	-
NP805_RS21550 (NP805_21545)	yacG	4602702..4602896 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
NP805_RS21555 (NP805_21550)	-	4602939..4604267 (-)	1329	WP_076611830.1	IS4-like element ISAs30 family transposase	-
NP805_RS21560 (NP805_21555)	mutT	4604412..4604819 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32423.70 Da
• Isoelectric Point: 7.0167

>NTDB_id=713466 NP805_RS21535 WP_256685974.1 4600423..4601298(+) (pilD) [Aeromonas salmonicida strain FN1]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKDGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

• Length: 876 bp

>NTDB_id=713466 NP805_RS21535 WP_256685974.1 4600423..4601298(+) (pilD) [Aeromonas salmonicida strain FN1]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAATGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAACCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCACTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCCCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCAGGCTGGG
GCACACTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCACTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCACTGCTGTGGGGTGGGCTGCTGTTCAACCTGCTTGGCGGATACGTGCCCCTCGGCGATGCTGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGATGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGTAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	54.647	92.44	0.505
pilD	Acinetobacter nosocomialis M2	54.647	92.44	0.505
pilD	Neisseria gonorrhoeae MS11	50.373	92.096	0.464