Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NFC81_RS04170 Genome accession   NZ_CP101717
Coordinates   950618..951826 (-) Length   402 a.a.
NCBI ID   WP_304996279.1    Uniprot ID   A0AB38YHV3
Organism   Salinispirillum sp. LH 10-3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 945618..956826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC81_RS04145 (NFC81_04145) argJ 947235..948449 (+) 1215 WP_304996273.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  NFC81_RS04150 (NFC81_04150) mutT 948412..948888 (+) 477 WP_304996274.1 8-oxo-dGTP diphosphatase MutT -
  NFC81_RS04155 (NFC81_04155) yacG 948903..949112 (-) 210 WP_304996275.1 DNA gyrase inhibitor YacG -
  NFC81_RS04160 (NFC81_04160) coaE 949135..949758 (-) 624 WP_304996276.1 dephospho-CoA kinase -
  NFC81_RS04165 (NFC81_04165) pilD 949743..950618 (-) 876 WP_304996278.1 A24 family peptidase Machinery gene
  NFC81_RS04170 (NFC81_04170) pilC 950618..951826 (-) 1209 WP_304996279.1 type II secretion system F family protein Machinery gene
  NFC81_RS04175 (NFC81_04175) pilB 951885..953588 (-) 1704 WP_304996280.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NFC81_RS04180 (NFC81_04185) - 953850..954335 (+) 486 WP_304996281.1 pilin -
  NFC81_RS04185 (NFC81_04190) - 954479..955786 (+) 1308 WP_304996282.1 O-antigen ligase family protein -
  NFC81_RS04190 (NFC81_04195) nadC 955756..956610 (-) 855 WP_304996283.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43852.61 Da        Isoelectric Point: 10.0700

>NTDB_id=711704 NFC81_RS04170 WP_304996279.1 950618..951826(-) (pilC) [Salinispirillum sp. LH 10-3-1]
MATKTVTFEYSGLDRKGKQTKGIIAQQNPALAKAELRKQGIQVKKIVKKREAFSLGNNTITNEDIALFTRQLAIMMRAGV
PLMQSFDIVANGVQKASLRGLILDIKNRVSSGGTLADALRGNPKYFDDLYCNLTEAGEQAGALETMLSRIALYKEKSEAL
KKKIKKALTYPIVVLVFAVVVTIVLLWKVVPVFADMFQGFGADLPLLTQMVVNMSDWMVAHILKVIVGTAAFIVLFQQGM
RRSTKFRHTVQRTIVRLPVIGNLTRTSAIARYARTLSTTFAAGVPLVDALSSAAGASGNIVFYEAINNVRNDVSSGTELN
QSMTRQEVFPPMLVQMVTIGEQAGSLDDMLGRAATIYEEEVDNLVDGMTAMIEPAIMAFLAVVVGGLLISMYLPIFMMGS
VI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=711704 NFC81_RS04170 WP_304996279.1 950618..951826(-) (pilC) [Salinispirillum sp. LH 10-3-1]
ATGGCGACCAAGACAGTAACCTTTGAATACAGCGGCTTAGATCGCAAAGGCAAGCAAACCAAAGGCATTATTGCGCAGCA
GAACCCGGCGTTGGCAAAAGCAGAACTGCGCAAGCAAGGCATTCAGGTCAAGAAGATCGTCAAGAAGCGTGAAGCTTTTT
CTCTAGGCAATAACACCATTACCAATGAAGACATCGCGCTCTTTACCCGTCAGCTTGCCATCATGATGCGCGCCGGTGTA
CCGCTGATGCAGTCCTTTGACATTGTCGCCAATGGTGTGCAAAAAGCTTCGTTGCGCGGCTTAATTCTTGACATCAAGAA
CCGTGTTTCCAGTGGTGGTACGCTGGCCGATGCACTCCGCGGTAACCCCAAGTATTTTGATGACCTCTATTGCAACCTGA
CAGAAGCTGGTGAACAAGCGGGTGCTCTGGAAACCATGCTGTCGCGCATCGCGTTGTACAAAGAGAAATCGGAAGCGCTG
AAGAAAAAGATCAAAAAGGCCCTCACCTACCCTATCGTCGTATTGGTGTTCGCTGTAGTGGTGACCATCGTTCTATTGTG
GAAAGTGGTGCCGGTTTTCGCTGATATGTTCCAAGGCTTTGGGGCAGATTTGCCATTGCTGACCCAGATGGTGGTCAACA
TGTCTGATTGGATGGTGGCACACATTCTGAAGGTCATTGTCGGTACAGCTGCCTTTATCGTCTTGTTTCAGCAAGGTATG
CGGCGCTCCACCAAGTTCAGGCACACCGTGCAGCGCACCATAGTACGACTTCCAGTCATCGGCAACTTGACGCGTACCAG
CGCCATCGCTCGCTATGCCCGCACACTCTCTACGACGTTTGCGGCAGGCGTCCCCTTGGTCGATGCGTTGAGCTCTGCAG
CAGGCGCATCCGGTAACATTGTTTTCTATGAGGCGATTAACAACGTGCGAAACGATGTTTCGTCCGGTACGGAGCTGAAT
CAATCCATGACGCGCCAAGAAGTGTTTCCACCTATGTTGGTGCAAATGGTGACCATTGGTGAGCAAGCCGGTTCACTAGA
CGACATGCTGGGTCGGGCCGCTACCATTTATGAGGAAGAAGTGGATAACTTGGTCGATGGCATGACAGCGATGATTGAGC
CAGCTATCATGGCTTTCTTGGCCGTTGTGGTAGGTGGCCTGCTGATCTCCATGTACTTGCCGATCTTTATGATGGGCTCG
GTTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.364

99.751

0.542
  pilC Acinetobacter baumannii D1279779

54.523

99.005

0.54
  pilC Acinetobacter baylyi ADP1

54.156

98.756

0.535
  pilC Legionella pneumophila strain ERS1305867

47.99

99.005

0.475
  pilG Neisseria meningitidis 44/76-A

43.666

92.289

0.403
  pilG Neisseria gonorrhoeae MS11

43.666

92.289

0.403
  pilC Vibrio cholerae strain A1552

39.803

100

0.403
  pilC Vibrio campbellii strain DS40M4

39.098

99.254

0.388