Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NFC81_RS04165 Genome accession   NZ_CP101717
Coordinates   949743..950618 (-) Length   291 a.a.
NCBI ID   WP_304996278.1    Uniprot ID   A0AB38YI57
Organism   Salinispirillum sp. LH 10-3-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 944743..955618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC81_RS04145 (NFC81_04145) argJ 947235..948449 (+) 1215 WP_304996273.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  NFC81_RS04150 (NFC81_04150) mutT 948412..948888 (+) 477 WP_304996274.1 8-oxo-dGTP diphosphatase MutT -
  NFC81_RS04155 (NFC81_04155) yacG 948903..949112 (-) 210 WP_304996275.1 DNA gyrase inhibitor YacG -
  NFC81_RS04160 (NFC81_04160) coaE 949135..949758 (-) 624 WP_304996276.1 dephospho-CoA kinase -
  NFC81_RS04165 (NFC81_04165) pilD 949743..950618 (-) 876 WP_304996278.1 A24 family peptidase Machinery gene
  NFC81_RS04170 (NFC81_04170) pilC 950618..951826 (-) 1209 WP_304996279.1 type II secretion system F family protein Machinery gene
  NFC81_RS04175 (NFC81_04175) pilB 951885..953588 (-) 1704 WP_304996280.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NFC81_RS04180 (NFC81_04185) - 953850..954335 (+) 486 WP_304996281.1 pilin -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 31755.74 Da        Isoelectric Point: 6.8273

>NTDB_id=711703 NFC81_RS04165 WP_304996278.1 949743..950618(-) (pilD) [Salinispirillum sp. LH 10-3-1]
MQSFIVTLQQMPAIYYALALLFGLCIGSFLNVVIHRLPKMLERAWQYEARSVLALESGEAEEPYNLAVPRSACPSCGHRI
RWFENLPVVSYLFLRGRCSACGASIGGRYPLVELLTAALTVAVALSVPPSLAALLWMAFVWALVALTFIDLDTQLLPDQI
TLPLLWLGLLLHISPSSGLSLDQAVIGAAAGYGSLWLVFHAFRLLTGKEGMGYGDFKLFAVFGAWFGWQALPLIILLSSV
VGAIAGLLMMLLLGRDRQIPIAFGPYLCGAALVYLFWGEQLVQGYLAWAMG

Nucleotide


Download         Length: 876 bp        

>NTDB_id=711703 NFC81_RS04165 WP_304996278.1 949743..950618(-) (pilD) [Salinispirillum sp. LH 10-3-1]
ATGCAGTCTTTTATTGTTACCCTGCAGCAAATGCCCGCCATTTACTATGCCCTCGCGCTGTTGTTTGGCCTTTGCATCGG
CAGTTTCTTGAATGTGGTTATTCACCGCCTTCCCAAAATGCTCGAACGGGCATGGCAATATGAAGCCAGAAGTGTTCTGG
CGTTGGAATCTGGAGAGGCAGAAGAGCCCTATAATTTAGCAGTGCCGCGCTCGGCCTGCCCTTCGTGCGGGCACCGCATA
CGGTGGTTTGAGAACTTGCCCGTCGTTAGCTATCTGTTTCTACGCGGCCGTTGCAGTGCTTGTGGGGCCTCTATCGGTGG
TCGCTATCCTCTCGTTGAGCTGCTCACTGCCGCCTTGACCGTGGCAGTGGCACTTTCCGTCCCACCCAGCTTGGCGGCTT
TGCTGTGGATGGCATTTGTCTGGGCGTTGGTAGCACTGACCTTTATTGACTTAGACACTCAGCTATTACCCGATCAAATC
ACGCTACCACTTCTCTGGCTAGGCCTGCTCTTGCACATTTCGCCATCTAGCGGCTTGTCGCTTGATCAAGCTGTTATTGG
GGCTGCGGCGGGATACGGGTCGTTGTGGCTGGTGTTTCATGCTTTCCGTTTGCTCACCGGTAAAGAAGGCATGGGTTATG
GCGACTTCAAGCTCTTTGCGGTGTTTGGAGCCTGGTTTGGCTGGCAAGCGTTACCGTTAATCATTTTGTTATCGTCCGTA
GTGGGCGCTATAGCGGGCTTGCTCATGATGCTGCTACTCGGCCGTGACCGCCAGATCCCCATTGCCTTTGGGCCCTATCT
GTGTGGCGCTGCCTTGGTTTATCTGTTTTGGGGCGAGCAGCTGGTACAGGGGTATTTAGCATGGGCAATGGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(137-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.65

98.282

0.488
  pilD Vibrio cholerae strain A1552

50.903

95.189

0.485
  pilD Acinetobacter baumannii D1279779

46.939

100

0.474
  pilD Acinetobacter nosocomialis M2

46.259

100

0.467
  pilD Neisseria gonorrhoeae MS11

48.819

87.285

0.426