Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NM620_RS14150 Genome accession   NZ_CP101694
Coordinates   3030106..3031206 (-) Length   366 a.a.
NCBI ID   WP_256383404.1    Uniprot ID   -
Organism   Photobacterium toruni strain WD2103     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3025106..3036206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS14120 hemF 3025721..3026641 (-) 921 WP_256383399.1 oxygen-dependent coproporphyrinogen oxidase -
  NM620_RS14125 tsaC 3026645..3027202 (-) 558 WP_256383400.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  NM620_RS14130 purE 3027397..3027885 (+) 489 WP_256383401.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NM620_RS14135 - 3027885..3029003 (+) 1119 WP_256383402.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NM620_RS14140 - 3029067..3029627 (-) 561 WP_256383403.1 type I DNA topoisomerase -
  NM620_RS14145 - 3029630..3030103 (-) 474 WP_080176155.1 DUF494 family protein -
  NM620_RS14150 dprA 3030106..3031206 (-) 1101 WP_256383404.1 DNA-processing protein DprA Machinery gene
  NM620_RS14155 - 3031212..3032282 (-) 1071 WP_256383405.1 LysM peptidoglycan-binding domain-containing protein -
  NM620_RS14160 def 3032631..3033131 (+) 501 WP_080176158.1 peptide deformylase -
  NM620_RS14165 fmt 3033156..3034100 (+) 945 WP_256383406.1 methionyl-tRNA formyltransferase -
  NM620_RS14170 rsmB 3034186..3035466 (+) 1281 WP_080176160.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39243.01 Da        Isoelectric Point: 7.5091

>NTDB_id=711590 NM620_RS14150 WP_256383404.1 3030106..3031206(-) (dprA) [Photobacterium toruni strain WD2103]
MTETELIAWLQLAAVPSLGGSRIQRLLTHITPPQLIAMTTEQLQQCGLTAKQIQAFLHPNQSRLQHALQWQQVSQQHILT
LASPYYPHLLKQIASPPPILFVRGDIACLGAPQIAVIGSRSASIDGRESAFHFSKALAANNYVVTSGLALGIDGQAHQGA
LQAGGLTIAVLGSGLDQIYPARHRSLAASIAEQGALVSEFWPQEQPRPQNFPRRNRVISGLSAGVLVIEAAQKSGSLITA
RYALEQGREVFALPGSIHNPASRGCNALIKSGAKLVESPADIYEEVGSLTECAINHQIGVPLATKENEELPFPALLANVG
TEATPVDVVAERCKQPIHQILPQLLELELSGWVTAVPGGYIRTRRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=711590 NM620_RS14150 WP_256383404.1 3030106..3031206(-) (dprA) [Photobacterium toruni strain WD2103]
ATGACTGAAACTGAACTTATTGCATGGTTACAACTTGCGGCTGTCCCCTCATTGGGTGGCAGCCGTATTCAACGTCTATT
AACGCATATCACACCGCCACAGCTTATTGCGATGACAACTGAACAGCTGCAGCAATGTGGGTTGACGGCAAAACAAATAC
AGGCTTTTTTGCACCCTAATCAATCTCGATTGCAACATGCTCTGCAATGGCAGCAAGTCTCGCAACAGCATATTTTGACC
CTCGCTTCACCGTATTATCCGCATTTATTAAAGCAGATCGCGTCACCGCCACCGATATTATTTGTGCGGGGTGATATAGC
TTGTTTGGGGGCTCCACAAATTGCCGTGATCGGTAGCCGTTCTGCATCGATTGATGGCCGAGAATCAGCCTTTCATTTTT
CAAAAGCATTAGCGGCTAATAATTACGTGGTGACCAGTGGCTTGGCTCTGGGGATTGACGGTCAGGCACATCAAGGTGCG
TTGCAAGCTGGAGGGTTAACCATTGCGGTGTTAGGTTCTGGGCTTGATCAGATTTATCCAGCACGACATCGGTCATTGGC
TGCCAGTATTGCAGAACAAGGTGCATTAGTATCAGAATTTTGGCCGCAAGAGCAACCTCGTCCGCAAAATTTTCCGCGTC
GAAATCGTGTCATTAGTGGTTTATCTGCTGGTGTATTAGTGATTGAGGCGGCTCAAAAAAGTGGTTCTCTAATTACTGCT
CGTTATGCCTTAGAGCAAGGACGAGAAGTTTTTGCACTGCCAGGTTCTATTCATAATCCTGCCAGTCGTGGTTGTAATGC
GCTGATTAAATCAGGTGCTAAACTGGTAGAAAGTCCTGCTGATATTTATGAAGAGGTAGGAAGCCTGACAGAATGTGCAA
TAAACCATCAAATAGGCGTGCCTTTAGCAACGAAGGAAAATGAAGAATTGCCATTTCCTGCGCTGTTGGCTAACGTAGGC
ACCGAAGCAACACCCGTAGATGTCGTTGCTGAACGCTGTAAACAACCCATCCACCAAATTTTACCGCAATTATTAGAATT
AGAACTGTCTGGTTGGGTGACTGCAGTGCCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-359)

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.104

100

0.571
  dprA Vibrio cholerae strain A1552

52.022

100

0.527
  dprA Haemophilus influenzae Rd KW20

47.904

91.257

0.437
  dprA Glaesserella parasuis strain SC1401

55.439

77.869

0.432
  dprA Neisseria meningitidis strain C311

39.394

100

0.426
  dprA Neisseria meningitidis MC58

39.394

100

0.426
  dprA Legionella pneumophila strain ERS1305867

46.97

90.164

0.424
  dprA Neisseria gonorrhoeae MS11

38.579

100

0.415
  dprA Neisseria gonorrhoeae strain FA1090

38.071

100

0.41
  dprA Acinetobacter baylyi ADP1

40.476

91.803

0.372