Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NMB96_RS23235 Genome accession   NZ_CP101417
Coordinates   5421428..5422687 (+) Length   419 a.a.
NCBI ID   WP_023904909.1    Uniprot ID   A0A6V7CKE3
Organism   Xanthomonas hortorum strain jj2001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5416428..5427687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS23215 (NMB96_23190) - 5417856..5418038 (+) 183 WP_074066024.1 YhfG family protein -
  NMB96_RS23220 (NMB96_23195) - 5418035..5418652 (+) 618 WP_255085842.1 Fic family protein -
  NMB96_RS23225 (NMB96_23200) pilB 5418661..5420397 (-) 1737 WP_023904907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NMB96_RS23230 (NMB96_23205) pilA2 5420650..5421075 (-) 426 WP_023904908.1 pilin Machinery gene
  NMB96_RS23235 (NMB96_23210) pilC 5421428..5422687 (+) 1260 WP_023904909.1 type II secretion system F family protein Machinery gene
  NMB96_RS23240 (NMB96_23215) - 5422694..5423557 (+) 864 WP_002812278.1 A24 family peptidase -
  NMB96_RS23245 (NMB96_23220) coaE 5423571..5424194 (+) 624 WP_023904910.1 dephospho-CoA kinase -
  NMB96_RS23250 (NMB96_23225) - 5424397..5425377 (+) 981 WP_183086603.1 IS5 family transposase -
  NMB96_RS23255 (NMB96_23230) - 5425889..5426281 (+) 393 WP_023904911.1 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46003.45 Da        Isoelectric Point: 10.2301

>NTDB_id=710108 NMB96_RS23235 WP_023904909.1 5421428..5422687(+) (pilC) [Xanthomonas hortorum strain jj2001]
MSVARSAIKKQPVDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=710108 NMB96_RS23235 WP_023904909.1 5421428..5422687(+) (pilC) [Xanthomonas hortorum strain jj2001]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTCAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTACTGGAG
ACTGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCCGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATTGGCGAAGAAGCAGGCGCTTTGGACACGATGTTGTTCAAGGTAGCTGACTACTTCG
AGGAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCTGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CKE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.956

96.897

0.513
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

39

95.465

0.372