Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   H7680_RS08340 Genome accession   NZ_AP023394
Coordinates   1697689..1698723 (-) Length   344 a.a.
NCBI ID   WP_003062324.1    Uniprot ID   A0ABU0A592
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692689..1703723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS08305 (SDSE159_16200) - 1693314..1693616 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  H7680_RS08310 (SDSE159_16210) - 1693609..1693905 (-) 297 WP_003057040.1 YlxR family protein -
  H7680_RS08315 (SDSE159_16220) nusA 1693921..1695078 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  H7680_RS08320 (SDSE159_16230) rimP 1695221..1695715 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  H7680_RS08330 (SDSE159_16240) trmB 1696198..1696833 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H7680_RS08335 (SDSE159_16250) - 1696833..1697624 (-) 792 WP_003052472.1 phosphotransferase family protein -
  H7680_RS08340 (SDSE159_16260) pptB 1697689..1698723 (-) 1035 WP_003062324.1 ABC transporter permease Regulator
  H7680_RS08345 (SDSE159_16270) pptA 1698726..1699451 (-) 726 WP_014612539.1 ABC transporter ATP-binding protein Regulator
  H7680_RS08350 (SDSE159_16280) - 1699523..1699942 (+) 420 WP_012767493.1 HIT family protein -
  H7680_RS08355 (SDSE159_16290) - 1699939..1700268 (+) 330 WP_003057072.1 hypothetical protein -
  H7680_RS08360 (SDSE159_16300) - 1700426..1701694 (-) 1269 WP_015058007.1 LCP family protein -
  H7680_RS08365 (SDSE159_16310) - 1701706..1702227 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  H7680_RS08370 (SDSE159_16320) tsaE 1702220..1702663 (-) 444 WP_014612541.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40056.25 Da        Isoelectric Point: 10.2471

>NTDB_id=70970 H7680_RS08340 WP_003062324.1 1697689..1698723(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIGGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRQFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=70970 H7680_RS08340 WP_003062324.1 1697689..1698723(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TGGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACAATTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)

Bacterial ABC transporter protein EcsB (EcsB)

(151-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.512

100

0.465
  pptB Streptococcus salivarius strain HSISS4

46.221

100

0.462

Multiple sequence alignment