Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL386_RS03680 Genome accession   NZ_AP018725
Coordinates   710177..711406 (-) Length   409 a.a.
NCBI ID   WP_126453546.1    Uniprot ID   -
Organism   Sulfuriflexus mobilis strain aks1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 705177..716406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL386_RS03650 argJ 705188..706408 (+) 1221 WP_126453534.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  EL386_RS03655 - 706408..707346 (+) 939 WP_126453536.1 Nudix family hydrolase -
  EL386_RS03660 yacG 707343..707528 (-) 186 WP_126453538.1 DNA gyrase inhibitor YacG -
  EL386_RS03665 zapD 707535..708305 (-) 771 WP_126453540.1 cell division protein ZapD -
  EL386_RS03670 coaE 708413..709006 (-) 594 WP_126453542.1 dephospho-CoA kinase -
  EL386_RS03675 - 709295..710170 (-) 876 WP_126453544.1 prepilin peptidase -
  EL386_RS03680 pilC 710177..711406 (-) 1230 WP_126453546.1 type II secretion system F family protein Machinery gene
  EL386_RS03685 pilB 711410..713125 (-) 1716 WP_172597607.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL386_RS03690 pilE 713427..713912 (-) 486 WP_126453548.1 pilin Machinery gene
  EL386_RS15925 - 714285..714338 (-) 54 WP_420856730.1 hypothetical protein -
  EL386_RS03700 - 714555..715322 (+) 768 WP_126453550.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44563.43 Da        Isoelectric Point: 9.5579

>NTDB_id=70537 EL386_RS03680 WP_126453546.1 710177..711406(-) (pilC) [Sulfuriflexus mobilis strain aks1]
MAGKATAEDIFIWEGANNKGAKVKGETNGRSVALVKADLRRQGINPIKVRKKPKSLFGSSGVKGKKVTPGDIAIFSRQLA
TMMSAGVPLVQAFEIAGRGHENPKVQDLLLSVKNDIESGNTLAESLAKHPYYFDELYCNLVQAGEHAGILEDMLGKIASY
KEKTESIKNKIKKALFYPIAVIVVAFIITAILMIFVIPTFKDMFTSFGADLPAPTLFVMGVSDIFVEYWYLVFGGVFAGI
YTFLEAKKRSVKFQHILQRMSLKMPVFGSLFHKAAIARFARTLSTMFAAGVPLVEALQSVAGAAGNIVYSTAILRMRDDV
STGQQLNITMRQQNLFPNMVVQMTAIGEEAGSIDAMLGKVADFYEAEVDDMVDAISSLMEPFIMVVLGGLIGGMVIAMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=70537 EL386_RS03680 WP_126453546.1 710177..711406(-) (pilC) [Sulfuriflexus mobilis strain aks1]
ATGGCCGGAAAAGCGACCGCAGAAGATATCTTCATTTGGGAAGGTGCCAACAACAAAGGTGCAAAAGTTAAAGGTGAAAC
CAATGGCAGGAGCGTTGCCCTGGTCAAGGCCGACCTTCGGCGCCAGGGTATCAACCCGATCAAGGTCCGCAAGAAACCTA
AATCTCTTTTTGGCAGTAGTGGCGTAAAAGGCAAGAAAGTCACCCCGGGTGATATTGCGATCTTCAGCCGCCAACTGGCG
ACGATGATGTCAGCGGGTGTGCCACTGGTACAGGCCTTTGAGATTGCCGGCCGGGGCCACGAGAACCCCAAGGTACAAGA
CCTGTTACTAAGCGTTAAAAATGACATTGAGAGTGGTAATACCCTGGCCGAATCTCTGGCCAAACACCCTTACTACTTTG
ATGAACTGTATTGTAACCTCGTTCAGGCCGGTGAACATGCCGGTATCCTCGAAGATATGCTCGGCAAGATTGCATCCTAC
AAAGAAAAAACCGAATCCATCAAAAACAAAATCAAAAAGGCCCTGTTTTACCCGATAGCCGTCATCGTGGTCGCCTTCAT
TATTACCGCAATCCTGATGATCTTTGTTATTCCTACCTTCAAGGACATGTTTACAAGTTTTGGTGCCGATCTTCCCGCAC
CAACACTCTTTGTCATGGGCGTTTCTGATATCTTTGTCGAATACTGGTATCTGGTTTTTGGCGGCGTGTTTGCTGGAATA
TATACTTTCCTGGAAGCAAAAAAACGTTCGGTGAAATTTCAACACATCCTGCAGCGCATGTCGCTTAAAATGCCGGTATT
CGGTTCGCTATTCCACAAGGCGGCCATTGCCCGGTTTGCCCGTACACTCTCCACCATGTTTGCCGCCGGGGTACCGCTGG
TCGAGGCCCTGCAGTCCGTCGCCGGGGCAGCCGGCAATATCGTTTATTCAACTGCGATCCTGCGTATGCGCGATGACGTC
TCAACCGGCCAACAACTCAATATCACCATGCGCCAACAGAACCTGTTCCCAAATATGGTCGTTCAGATGACCGCAATTGG
TGAAGAGGCCGGTTCTATCGATGCCATGCTCGGCAAGGTTGCCGATTTCTACGAGGCCGAGGTCGATGACATGGTCGACG
CCATCAGCAGCCTTATGGAACCCTTCATTATGGTCGTCCTCGGTGGCCTTATCGGCGGCATGGTGATCGCCATGTACCTG
CCTATTTTCAAACTTGGACAAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.213

100

0.572
  pilC Legionella pneumophila strain ERS1305867

57.393

97.555

0.56
  pilC Acinetobacter baylyi ADP1

55.637

99.756

0.555
  pilC Acinetobacter baumannii D1279779

53.448

99.267

0.531
  pilG Neisseria meningitidis 44/76-A

46.059

99.267

0.457
  pilG Neisseria gonorrhoeae MS11

46.059

99.267

0.457
  pilC Vibrio campbellii strain DS40M4

39.109

98.778

0.386
  pilC Vibrio cholerae strain A1552

39

97.8

0.381

Multiple sequence alignment