Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NLY75_RS00385 Genome accession   NZ_CP100432
Coordinates   65247..66428 (+) Length   393 a.a.
NCBI ID   WP_023369043.1    Uniprot ID   A0A822VFJ5
Organism   Streptococcus suis T15     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 60247..71428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS00365 (NLY75_00365) ruvA 62200..62790 (+) 591 WP_023369035.1 Holliday junction branch migration protein RuvA -
  NLY75_RS00370 (NLY75_00370) - 63420..63980 (+) 561 WP_023369037.1 DNA-3-methyladenine glycosylase I -
  NLY75_RS00375 (NLY75_00375) - 64054..64464 (+) 411 WP_023369039.1 helix-turn-helix transcriptional regulator -
  NLY75_RS00380 (NLY75_00380) - 64437..65102 (+) 666 WP_023369041.1 CPBP family intramembrane glutamic endopeptidase -
  NLY75_RS00385 (NLY75_00385) cinA 65247..66428 (+) 1182 WP_023369043.1 competence/damage-inducible protein A Machinery gene
  NLY75_RS00390 (NLY75_00390) recA 66480..67628 (+) 1149 WP_023369045.1 recombinase RecA Machinery gene
  NLY75_RS00395 (NLY75_00395) spx 67864..68262 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NLY75_RS00400 (NLY75_00400) - 68362..68628 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  NLY75_RS00405 (NLY75_00405) ruvX 68628..69047 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  NLY75_RS00410 (NLY75_00410) - 69059..69391 (+) 333 WP_023369048.1 DUF1292 domain-containing protein -
  NLY75_RS00415 (NLY75_00415) - 69598..69834 (+) 237 Protein_62 nucleotidyltransferase family protein -
  NLY75_RS00420 (NLY75_00420) rpsJ 70081..70389 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  NLY75_RS00425 (NLY75_00425) rplC 70602..71228 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42819.71 Da        Isoelectric Point: 4.4397

>NTDB_id=705289 NLY75_RS00385 WP_023369043.1 65247..66428(+) (cinA) [Streptococcus suis T15]
MKAELIAVGTEILTGQIINTNAQFLSEKFAELGIDVYFHTAVGDNEGRLLSTLEVASKRSNMVVLCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRLFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEED
ILQHDKLADYFYAYGEDNSLAKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADLPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNILAKVYLTLATTSGISQKEVDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=705289 NLY75_RS00385 WP_023369043.1 65247..66428(+) (cinA) [Streptococcus suis T15]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATTATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATTTGCGGAGCTAGGGATTGATGTTTATTTTCATACGGCAGTTGGTGACAATGAAGGCCGTTTATTATCAACCCTTG
AAGTAGCCAGCAAGCGGAGTAATATGGTCGTTCTTTGCGGTGGTTTGGGACCAACTGAGGACGACCTGACCAAGCAGACC
TTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTCTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGAATTGG
CGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTAAATCAGTTGGAAGAAGAC
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGCCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCTGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CATACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGGTAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VFJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

97.201

100

0.972
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus pneumoniae R6

55.769

100

0.59
  cinA Streptococcus mitis SK321

55.769

100

0.59
  cinA Streptococcus pneumoniae TIGR4

55.769

100

0.59
  cinA Streptococcus pneumoniae Rx1

55.769

100

0.59
  cinA Streptococcus mitis NCTC 12261

55.529

100

0.588
  cinA Streptococcus pneumoniae D39

55.529

100

0.588
  cinA Bacillus subtilis subsp. subtilis str. 168

40.153

99.491

0.399