Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NLY75_RS00390 Genome accession   NZ_CP100432
Coordinates   66480..67628 (+) Length   382 a.a.
NCBI ID   WP_023369045.1    Uniprot ID   A0A822VL11
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 61480..72628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS00365 (NLY75_00365) ruvA 62200..62790 (+) 591 WP_023369035.1 Holliday junction branch migration protein RuvA -
  NLY75_RS00370 (NLY75_00370) - 63420..63980 (+) 561 WP_023369037.1 DNA-3-methyladenine glycosylase I -
  NLY75_RS00375 (NLY75_00375) - 64054..64464 (+) 411 WP_023369039.1 helix-turn-helix transcriptional regulator -
  NLY75_RS00380 (NLY75_00380) - 64437..65102 (+) 666 WP_023369041.1 CPBP family intramembrane glutamic endopeptidase -
  NLY75_RS00385 (NLY75_00385) cinA 65247..66428 (+) 1182 WP_023369043.1 competence/damage-inducible protein A Machinery gene
  NLY75_RS00390 (NLY75_00390) recA 66480..67628 (+) 1149 WP_023369045.1 recombinase RecA Machinery gene
  NLY75_RS00395 (NLY75_00395) spx 67864..68262 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NLY75_RS00400 (NLY75_00400) - 68362..68628 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  NLY75_RS00405 (NLY75_00405) ruvX 68628..69047 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  NLY75_RS00410 (NLY75_00410) - 69059..69391 (+) 333 WP_023369048.1 DUF1292 domain-containing protein -
  NLY75_RS00415 (NLY75_00415) - 69598..69834 (+) 237 Protein_62 nucleotidyltransferase family protein -
  NLY75_RS00420 (NLY75_00420) rpsJ 70081..70389 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  NLY75_RS00425 (NLY75_00425) rplC 70602..71228 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  NLY75_RS00430 (NLY75_00430) rplD 71253..71876 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  NLY75_RS00435 (NLY75_00435) - 71876..72175 (+) 300 WP_004195491.1 50S ribosomal protein L23 -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 40805.51 Da        Isoelectric Point: 4.8910

>NTDB_id=705290 NLY75_RS00390 WP_023369045.1 66480..67628(+) (recA) [Streptococcus suis T15]
MAKKPTKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=705290 NLY75_RS00390 WP_023369045.1 66480..67628(+) (recA) [Streptococcus suis T15]
TTGGCTAAGAAACCAACTAAGAAATTAGAAGATATTACAAAGAAATTTGGCGATGAACGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCTGAGAGCTCGGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGCTTGCAGGCTCGCATGATGAGTCA
GGCCATGCGCAAACTCGGTGCATCCATCAACAAAACAAAAACAGTAGCTATTTTCATTAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCGCTAAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGATT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAGCTCCTGTTGCGGAAGAAATCCAAGATGTTATCCTAGATC
TTGATGGCGGTATTGAATTAGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A822VL11

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.198

100

0.866

  recA Streptococcus pyogenes NZ131

85.34

100

0.853

  recA Streptococcus pneumoniae D39

83.854

100

0.843

  recA Streptococcus pneumoniae R6

83.854

100

0.843

  recA Streptococcus pneumoniae TIGR4

83.854

100

0.843

  recA Streptococcus pneumoniae Rx1

83.854

100

0.843

  recA Streptococcus mitis NCTC 12261

83.508

100

0.835

  recA Streptococcus mitis SK321

82.723

100

0.827

  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.623

0.688

  recA Latilactobacillus sakei subsp. sakei 23K

64.507

92.932

0.599

  recA Bacillus subtilis subsp. subtilis str. 168

68.085

86.126

0.586

  recA Acinetobacter baumannii D1279779

60.116

90.576

0.545

  recA Neisseria gonorrhoeae MS11

62.236

86.649

0.539

  recA Neisseria gonorrhoeae MS11

62.236

86.649

0.539

  recA Neisseria gonorrhoeae strain FA1090

62.236

86.649

0.539

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.435

0.529

  recA Pseudomonas stutzeri DSM 10701

57.386

92.147

0.529

  recA Glaesserella parasuis strain SC1401

59.118

89.005

0.526

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.944

89.267

0.526

  recA Acinetobacter baylyi ADP1

61.538

85.079

0.524

  recA Vibrio cholerae strain A1552

61.538

85.079

0.524

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

85.079

0.524

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.649

0.508

  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.984

0.503

  recA Helicobacter pylori strain NCTC11637

57.879

86.387

0.5

  recA Helicobacter pylori 26695

57.879

86.387

0.5