Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   PDI73_RS08560 Genome accession   NZ_CP115479
Coordinates   1772250..1772915 (+) Length   221 a.a.
NCBI ID   WP_033900770.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767250..1777915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS08530 (PDI73_08530) - 1768476..1768718 (-) 243 WP_033900778.1 lactococcin 972 family bacteriocin -
  PDI73_RS08535 (PDI73_08535) - 1769018..1769746 (-) 729 WP_033900776.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  PDI73_RS08540 (PDI73_08540) - 1769938..1770159 (+) 222 WP_010906270.1 YqgQ family protein -
  PDI73_RS08545 (PDI73_08545) - 1770194..1771165 (+) 972 WP_017865099.1 ROK family glucokinase -
  PDI73_RS08550 (PDI73_08550) - 1771168..1771554 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  PDI73_RS08555 (PDI73_08555) - 1771637..1772083 (-) 447 WP_004254538.1 Dps family protein -
  PDI73_RS08560 (PDI73_08560) cclA/cilC 1772250..1772915 (+) 666 WP_033900770.1 A24 family peptidase Machinery gene
  PDI73_RS08565 (PDI73_08565) dinB 1772866..1773960 (-) 1095 WP_023164600.1 DNA polymerase IV -
  PDI73_RS08570 (PDI73_08570) - 1774039..1774530 (-) 492 WP_010906273.1 prolyl-tRNA synthetase associated domain-containing protein -
  PDI73_RS08575 (PDI73_08575) - 1774609..1776102 (-) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  PDI73_RS08580 (PDI73_08580) - 1776294..1777424 (-) 1131 WP_014570781.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25650.84 Da        Isoelectric Point: 8.8481

>NTDB_id=704817 PDI73_RS08560 WP_033900770.1 1772250..1772915(+) (cclA/cilC) [Lactococcus lactis strain EP2]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=704817 PDI73_RS08560 WP_033900770.1 1772250..1772915(+) (cclA/cilC) [Lactococcus lactis strain EP2]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACACTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGTTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362