Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NKI27_RS14020 | Genome accession | NZ_CP100390 |
| Coordinates | 3093317..3094186 (+) | Length | 289 a.a. |
| NCBI ID | WP_265046656.1 | Uniprot ID | - |
| Organism | Alkalimarinus alittae strain A2M4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3088317..3099186
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NKI27_RS13990 (NKI27_13960) | - | 3088987..3089433 (-) | 447 | WP_320109427.1 | pilin | - |
| NKI27_RS14000 (NKI27_13970) | - | 3089505..3089975 (-) | 471 | WP_320109428.1 | pilin | - |
| NKI27_RS14010 (NKI27_13980) | pilB | 3090312..3092021 (+) | 1710 | WP_265046654.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NKI27_RS14015 (NKI27_13985) | pilC | 3092024..3093250 (+) | 1227 | WP_265046655.1 | type II secretion system F family protein | Machinery gene |
| NKI27_RS14020 (NKI27_13990) | pilD | 3093317..3094186 (+) | 870 | WP_265046656.1 | A24 family peptidase | Machinery gene |
| NKI27_RS14025 (NKI27_13995) | - | 3094234..3094809 (+) | 576 | WP_265046657.1 | AAA family ATPase | - |
| NKI27_RS14030 (NKI27_14000) | - | 3094809..3094982 (+) | 174 | WP_265046658.1 | hypothetical protein | - |
| NKI27_RS14035 (NKI27_14005) | coaE | 3095019..3095606 (+) | 588 | WP_265046659.1 | dephospho-CoA kinase | - |
| NKI27_RS14040 (NKI27_14010) | yacG | 3095637..3095864 (+) | 228 | WP_265046660.1 | DNA gyrase inhibitor YacG | - |
| NKI27_RS14045 (NKI27_14015) | - | 3095884..3096330 (+) | 447 | WP_265046661.1 | HIT family protein | - |
| NKI27_RS14050 (NKI27_14020) | - | 3096345..3096704 (+) | 360 | WP_265046662.1 | CidA/LrgA family protein | - |
| NKI27_RS14055 (NKI27_14025) | - | 3096701..3097420 (+) | 720 | WP_265046663.1 | LrgB family protein | - |
| NKI27_RS14060 (NKI27_14030) | tsaA | 3097433..3098146 (+) | 714 | WP_265046664.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| NKI27_RS14065 (NKI27_14035) | - | 3098285..3098725 (-) | 441 | WP_265046665.1 | PilZ domain-containing protein | - |
| NKI27_RS14070 (NKI27_14040) | - | 3098866..3099117 (+) | 252 | WP_265046666.1 | YkgJ family cysteine cluster protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31812.79 Da Isoelectric Point: 5.2758
>NTDB_id=704818 NKI27_RS14020 WP_265046656.1 3093317..3094186(+) (pilD) [Alkalimarinus alittae strain A2M4]
MQNLDLFLNSPEYLYPSIFILGLIIGSFLNVVIYRIPKMLEQEWKSQCCELLEVEGKEEPKVTLSTPNSTCPQCGHEIKP
WENIPVISYLFLRGKCSSCKTTISLRYPIIELVTGILSLGVIGVLGANGAGFSALFLTWVLIALTMIDFDTQLLPDNMTL
PLVWLGLIVNSYGLFVPLEEALWGAVAGYLSLWTVYHGFKLLTGKEGMGFGDFKLLAALGAWMGWQLLPVIILLSSLVGA
VVGILLIAIKGRDKNIPIPFGPYLAAAGWLALLWGHDITQAYLQFSGMK
MQNLDLFLNSPEYLYPSIFILGLIIGSFLNVVIYRIPKMLEQEWKSQCCELLEVEGKEEPKVTLSTPNSTCPQCGHEIKP
WENIPVISYLFLRGKCSSCKTTISLRYPIIELVTGILSLGVIGVLGANGAGFSALFLTWVLIALTMIDFDTQLLPDNMTL
PLVWLGLIVNSYGLFVPLEEALWGAVAGYLSLWTVYHGFKLLTGKEGMGFGDFKLLAALGAWMGWQLLPVIILLSSLVGA
VVGILLIAIKGRDKNIPIPFGPYLAAAGWLALLWGHDITQAYLQFSGMK
Nucleotide
Download Length: 870 bp
>NTDB_id=704818 NKI27_RS14020 WP_265046656.1 3093317..3094186(+) (pilD) [Alkalimarinus alittae strain A2M4]
ATGCAAAACCTAGATCTATTCCTAAATTCCCCAGAATACCTCTACCCTTCTATCTTCATTCTGGGCCTTATCATCGGTAG
CTTCTTAAACGTCGTGATCTATCGCATACCTAAAATGCTGGAGCAAGAGTGGAAATCTCAGTGTTGTGAGTTGCTAGAAG
TTGAAGGTAAAGAAGAGCCTAAAGTAACCCTCTCCACCCCCAACTCTACCTGCCCTCAATGTGGTCACGAAATAAAGCCT
TGGGAGAACATCCCCGTTATTAGCTATTTATTTCTACGCGGTAAATGTTCTTCGTGTAAAACAACTATATCGCTTAGATA
CCCTATTATTGAATTAGTCACAGGCATTTTATCCCTTGGTGTGATTGGCGTATTAGGCGCTAATGGTGCGGGTTTTTCAG
CGCTGTTTCTGACCTGGGTGCTTATTGCGCTGACGATGATTGATTTTGATACTCAACTGCTGCCTGACAACATGACCTTA
CCACTCGTATGGTTAGGGCTTATTGTTAACTCATACGGCCTATTTGTACCGCTTGAAGAAGCACTTTGGGGGGCTGTTGC
GGGCTATTTAAGTCTTTGGACGGTTTATCATGGGTTTAAGCTCCTCACAGGCAAAGAAGGCATGGGCTTTGGCGACTTTA
AGTTACTGGCTGCCTTAGGGGCCTGGATGGGATGGCAGCTGTTACCTGTCATTATTCTGTTATCTTCTCTTGTGGGTGCA
GTTGTAGGCATATTACTCATTGCGATCAAGGGCCGCGATAAGAATATCCCTATCCCATTTGGTCCATACCTTGCTGCTGC
CGGCTGGCTAGCACTACTTTGGGGGCATGACATCACCCAAGCTTACCTTCAATTTTCAGGCATGAAGTAA
ATGCAAAACCTAGATCTATTCCTAAATTCCCCAGAATACCTCTACCCTTCTATCTTCATTCTGGGCCTTATCATCGGTAG
CTTCTTAAACGTCGTGATCTATCGCATACCTAAAATGCTGGAGCAAGAGTGGAAATCTCAGTGTTGTGAGTTGCTAGAAG
TTGAAGGTAAAGAAGAGCCTAAAGTAACCCTCTCCACCCCCAACTCTACCTGCCCTCAATGTGGTCACGAAATAAAGCCT
TGGGAGAACATCCCCGTTATTAGCTATTTATTTCTACGCGGTAAATGTTCTTCGTGTAAAACAACTATATCGCTTAGATA
CCCTATTATTGAATTAGTCACAGGCATTTTATCCCTTGGTGTGATTGGCGTATTAGGCGCTAATGGTGCGGGTTTTTCAG
CGCTGTTTCTGACCTGGGTGCTTATTGCGCTGACGATGATTGATTTTGATACTCAACTGCTGCCTGACAACATGACCTTA
CCACTCGTATGGTTAGGGCTTATTGTTAACTCATACGGCCTATTTGTACCGCTTGAAGAAGCACTTTGGGGGGCTGTTGC
GGGCTATTTAAGTCTTTGGACGGTTTATCATGGGTTTAAGCTCCTCACAGGCAAAGAAGGCATGGGCTTTGGCGACTTTA
AGTTACTGGCTGCCTTAGGGGCCTGGATGGGATGGCAGCTGTTACCTGTCATTATTCTGTTATCTTCTCTTGTGGGTGCA
GTTGTAGGCATATTACTCATTGCGATCAAGGGCCGCGATAAGAATATCCCTATCCCATTTGGTCCATACCTTGCTGCTGC
CGGCTGGCTAGCACTACTTTGGGGGCATGACATCACCCAAGCTTACCTTCAATTTTCAGGCATGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
54.48 |
96.54 |
0.526 |
| pilD | Acinetobacter nosocomialis M2 |
54.48 |
96.54 |
0.526 |
| pilD | Vibrio cholerae strain A1552 |
53.047 |
96.54 |
0.512 |
| pilD | Vibrio campbellii strain DS40M4 |
53.069 |
95.848 |
0.509 |
| pilD | Neisseria gonorrhoeae MS11 |
52.612 |
92.734 |
0.488 |