Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NFC98_RS07495 Genome accession   NZ_CP100360
Coordinates   1603310..1604545 (-) Length   411 a.a.
NCBI ID   WP_254277462.1    Uniprot ID   -
Organism   Halomonas sp. 3H     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598310..1609545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC98_RS07465 - 1598659..1599093 (+) 435 WP_254277805.1 transposase -
  NFC98_RS07470 - 1599826..1600713 (-) 888 WP_254277459.1 DNA replication terminus site-binding protein -
  NFC98_RS07475 yacG 1600721..1600951 (-) 231 WP_183334371.1 DNA gyrase inhibitor YacG -
  NFC98_RS07480 coaE 1601040..1601651 (-) 612 WP_254277460.1 dephospho-CoA kinase -
  NFC98_RS07485 - 1601761..1602105 (+) 345 WP_254277461.1 four helix bundle protein -
  NFC98_RS07490 pilD 1602178..1603026 (-) 849 WP_254277806.1 A24 family peptidase Machinery gene
  NFC98_RS07495 pilC 1603310..1604545 (-) 1236 WP_254277462.1 type II secretion system F family protein Machinery gene
  NFC98_RS07500 pilB 1604686..1606467 (-) 1782 WP_254277807.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NFC98_RS07510 - 1606912..1607427 (+) 516 WP_367948961.1 pilin -
  NFC98_RS07515 mscL 1607674..1608105 (+) 432 WP_254277463.1 large conductance mechanosensitive channel protein MscL -
  NFC98_RS07520 - 1608198..1608743 (+) 546 WP_254277464.1 YqhA family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45116.94 Da        Isoelectric Point: 10.0177

>NTDB_id=704751 NFC98_RS07495 WP_254277462.1 1603310..1604545(-) (pilC) [Halomonas sp. 3H]
MATARKLRPHQKTKLYRWNWSGKGPGGRRVGGEIIAAQKMEVERILQGQNIIVKNVKRKGGFGGGMGSIKPKDIMLFARQ
MATMIRAGVPVLQAFQVVAESLKKPAMSALVQELMNDVAAGATFSDALKRHPQHFDRLFSNLVEAGEQSGSLDRMLDRVA
TYKEKVEMLKGRVKKALWYPAAVIAVGIGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFFQAYWWWGVLGFAA
FIFFIRTGMKKSEAFAYRMHAWSLKVPVIGEILDKSAVARYSRTLATTFGAGVPLVEALDTAAGATGNKVYERAVAQVRE
DVATGQQLAFAMRMTEQFPALAIQMVGIGEEAGSLDAMLNRVADYYEEEVDNMVDTLTSLLEPFIIVVLGVLVGGLVISM
YLPIFELGSVI

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=704751 NFC98_RS07495 WP_254277462.1 1603310..1604545(-) (pilC) [Halomonas sp. 3H]
ATGGCCACAGCACGGAAACTGCGCCCCCACCAGAAGACCAAGCTCTACCGCTGGAACTGGAGCGGCAAGGGCCCGGGCGG
GCGCCGGGTGGGGGGTGAGATCATCGCCGCCCAGAAGATGGAGGTCGAACGGATCCTCCAGGGCCAGAACATCATCGTCA
AGAACGTCAAGCGCAAGGGCGGCTTCGGCGGCGGCATGGGCTCGATCAAGCCCAAGGACATCATGCTCTTCGCCCGCCAG
ATGGCCACCATGATCCGCGCCGGCGTGCCGGTGCTGCAGGCCTTCCAGGTGGTGGCCGAGAGCCTCAAGAAGCCCGCCAT
GAGTGCCCTGGTGCAGGAGCTGATGAACGACGTGGCGGCTGGCGCCACCTTCTCCGATGCCCTCAAGCGCCACCCCCAGC
ACTTCGACCGGCTGTTCTCCAACCTGGTGGAGGCCGGCGAGCAGTCCGGCTCTCTGGACCGCATGCTCGACCGGGTCGCC
ACCTACAAGGAGAAGGTGGAGATGCTCAAGGGGCGCGTCAAGAAGGCGCTCTGGTACCCGGCGGCGGTCATCGCCGTCGG
CATCGGCGTCACCGCCCTGCTGCTGATCAAGGTGGTGCCGCAGTTCGAGAGCCTCTTCCACGGCTTCGGCGCCGAGCTGC
CGGCCATGACGCGGATGACCATCGCGCTGTCCGAGTTCTTCCAGGCCTACTGGTGGTGGGGGGTGCTGGGCTTCGCCGCC
TTCATCTTCTTCATCCGCACCGGCATGAAGAAGTCCGAGGCCTTCGCCTACCGCATGCACGCCTGGTCGCTGAAGGTGCC
GGTGATCGGCGAGATCCTCGACAAGTCCGCCGTGGCGCGCTATTCGCGTACGCTCGCGACCACCTTCGGCGCCGGCGTGC
CGCTGGTGGAGGCGCTGGACACCGCCGCGGGCGCCACCGGCAACAAGGTCTACGAGCGCGCCGTGGCCCAGGTCCGCGAG
GACGTGGCCACCGGCCAGCAGCTCGCCTTCGCCATGCGCATGACCGAGCAGTTCCCGGCCCTGGCCATCCAGATGGTCGG
CATCGGCGAGGAGGCGGGGTCGCTCGACGCCATGCTCAACCGCGTGGCCGACTACTACGAGGAGGAGGTCGACAACATGG
TCGACACCCTCACCTCGCTGCTGGAGCCCTTCATCATCGTGGTGCTCGGCGTGCTGGTCGGCGGCCTGGTGATCTCCATG
TACCTGCCGATCTTCGAGCTGGGTAGCGTGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

96.35

0.511
  pilC Legionella pneumophila strain ERS1305867

51.621

97.567

0.504
  pilC Acinetobacter baylyi ADP1

51.889

96.594

0.501
  pilC Acinetobacter baumannii D1279779

51.637

96.594

0.499
  pilC Vibrio cholerae strain A1552

43.873

99.27

0.436
  pilC Vibrio campbellii strain DS40M4

43.5

97.324

0.423
  pilG Neisseria gonorrhoeae MS11

41.481

98.54

0.409
  pilG Neisseria meningitidis 44/76-A

41.481

98.54

0.409