Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NFC98_RS07490 Genome accession   NZ_CP100360
Coordinates   1602178..1603026 (-) Length   282 a.a.
NCBI ID   WP_254277806.1    Uniprot ID   -
Organism   Halomonas sp. 3H     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597178..1608026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC98_RS07460 - 1597563..1598162 (+) 600 WP_254277458.1 anti-virulence regulator CigR family protein -
  NFC98_RS07465 - 1598659..1599093 (+) 435 WP_254277805.1 transposase -
  NFC98_RS07470 - 1599826..1600713 (-) 888 WP_254277459.1 DNA replication terminus site-binding protein -
  NFC98_RS07475 yacG 1600721..1600951 (-) 231 WP_183334371.1 DNA gyrase inhibitor YacG -
  NFC98_RS07480 coaE 1601040..1601651 (-) 612 WP_254277460.1 dephospho-CoA kinase -
  NFC98_RS07485 - 1601761..1602105 (+) 345 WP_254277461.1 four helix bundle protein -
  NFC98_RS07490 pilD 1602178..1603026 (-) 849 WP_254277806.1 A24 family peptidase Machinery gene
  NFC98_RS07495 pilC 1603310..1604545 (-) 1236 WP_254277462.1 type II secretion system F family protein Machinery gene
  NFC98_RS07500 pilB 1604686..1606467 (-) 1782 WP_254277807.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NFC98_RS07510 - 1606912..1607427 (+) 516 WP_367948961.1 pilin -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 30405.56 Da        Isoelectric Point: 7.1435

>NTDB_id=704750 NFC98_RS07490 WP_254277806.1 1602178..1603026(-) (pilD) [Halomonas sp. 3H]
MDLPPSLLWPLAAFVGLCLGSFLNVVIVRLPVMLMQGWRAEARDALELPAEEHPTFNLATPRSMCPSCETPIAWHDNLPV
VGWLKRRGRCAHCEARISPQYPLVELAGGALTLAVVALFGATWQGLFVLGACLALLAMAVIDLRTQLLPDLLTLPLLWAG
LAYQLLFQPLMLPSAVIGAMAGYLALWSFYWAFKLITGKEGMGYGDFKLLAALGAWMGWQALPLLLILSAGVGAIIGILV
QLAVPRLRGAPMPFGPYLALAGWIALLGGEPLMAVYGSFFVL

Nucleotide


Download         Length: 849 bp        

>NTDB_id=704750 NFC98_RS07490 WP_254277806.1 1602178..1603026(-) (pilD) [Halomonas sp. 3H]
CTGGACCTACCCCCTTCCCTGCTCTGGCCCCTGGCCGCCTTCGTCGGCCTGTGCCTGGGCAGCTTCCTCAACGTGGTGAT
CGTGCGCCTGCCGGTGATGCTGATGCAGGGCTGGCGGGCCGAGGCCCGCGACGCGCTGGAGCTGCCCGCCGAGGAGCACC
CCACCTTCAACCTGGCCACCCCGCGCTCAATGTGCCCGAGCTGCGAGACCCCCATCGCCTGGCACGACAACCTGCCGGTG
GTCGGCTGGCTGAAGCGCCGCGGGCGCTGCGCCCACTGCGAGGCGCGCATCAGCCCCCAGTACCCGCTGGTGGAGCTGGC
CGGCGGCGCGCTGACACTCGCCGTGGTGGCGCTGTTCGGCGCCACCTGGCAGGGCCTGTTCGTACTGGGGGCCTGCCTTG
CGCTGCTGGCCATGGCGGTGATCGACCTGCGCACCCAGCTCTTGCCGGACCTGCTCACCCTGCCGCTGCTCTGGGCGGGG
CTCGCCTACCAGCTGCTGTTCCAGCCGCTGATGCTGCCCAGCGCGGTGATCGGCGCCATGGCGGGCTATCTCGCGCTGTG
GAGCTTCTACTGGGCCTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTATGGCGACTTCAAGCTGCTCGCGGCACTCG
GCGCCTGGATGGGCTGGCAGGCCCTGCCGCTGCTGCTGATCCTCTCCGCCGGGGTGGGCGCCATCATCGGCATCCTGGTG
CAGCTGGCGGTGCCGCGGCTGCGCGGCGCGCCGATGCCCTTCGGCCCCTACCTGGCGCTGGCCGGCTGGATCGCGCTGCT
GGGCGGCGAGCCGCTGATGGCGGTGTATGGAAGCTTCTTTGTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-117)

Type IV leader peptidase family (Peptidase_A24)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.174

97.872

0.511
  pilD Vibrio campbellii strain DS40M4

48.375

98.227

0.475
  pilD Acinetobacter baumannii D1279779

49.446

96.099

0.475
  pilD Acinetobacter nosocomialis M2

49.077

96.099

0.472
  pilD Neisseria gonorrhoeae MS11

46.038

93.972

0.433