Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VCA1004_RS11125 Genome accession   NZ_AP018689
Coordinates   2454756..2455907 (-) Length   383 a.a.
NCBI ID   WP_086981813.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2449756..2460907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS11095 hemF 2450105..2451019 (-) 915 WP_086981807.1 oxygen-dependent coproporphyrinogen oxidase -
  VCA1004_RS11100 - 2451028..2451585 (-) 558 WP_086981808.1 Sua5/YciO/YrdC/YwlC family protein -
  VCA1004_RS11105 purE 2451823..2452308 (+) 486 WP_086981809.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VCA1004_RS11110 - 2452314..2453450 (+) 1137 WP_086981810.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VCA1004_RS11115 - 2453602..2454216 (-) 615 WP_086981811.1 type I DNA topoisomerase -
  VCA1004_RS11120 - 2454258..2454731 (-) 474 WP_086981812.1 DUF494 family protein -
  VCA1004_RS11125 dprA 2454756..2455907 (-) 1152 WP_086981813.1 DNA-processing protein DprA Machinery gene
  VCA1004_RS11130 - 2455904..2457010 (-) 1107 WP_086981814.1 LysM peptidoglycan-binding domain-containing protein -
  VCA1004_RS11135 def 2457141..2457653 (+) 513 WP_232012601.1 peptide deformylase -
  VCA1004_RS11140 fmt 2457684..2458643 (+) 960 WP_086981815.1 methionyl-tRNA formyltransferase -
  VCA1004_RS11145 rsmB 2458723..2460003 (+) 1281 WP_086981816.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41634.21 Da        Isoelectric Point: 6.3371

>NTDB_id=70414 VCA1004_RS11125 WP_086981813.1 2454756..2455907(-) (dprA) [Vibrio aphrogenes strain CA-1004]
MTEAQLTAWLTLSFTPQLGGVGLARLISVDSAENIVRYSSQQLQHLGLKAAQIRYLQQPSHPEVEQCLQWQAESDWHHIV
SPLEDDYPYLLNQMSSHPPVLFVKGDASVLHRQQVAIVGSRHASLEGLKAAKEFAYQLAEQGLTITSGLALGIDGHAHDG
ALLAQGTTVAVLGSGVEQIYPARHKGLAERIVQQGGALVSELRPDTKPRAEHFPRRNRIISGLSQGVLVVEAAERSGSLI
TARYAIEQNRDVFALPGSIYQAGFAGSNRLLQQGAYLALSPQDIIDELNPSLTRPFSLPRSSQSQLNLIPEASPPPVENH
SQSLPFPQLFANVGNEPTPVDILAERTHIPVHEVMMQILELELAGYVSSVPGGYILNHGSKPK

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=70414 VCA1004_RS11125 WP_086981813.1 2454756..2455907(-) (dprA) [Vibrio aphrogenes strain CA-1004]
ATGACGGAAGCACAATTAACCGCTTGGTTAACATTAAGCTTTACTCCTCAGCTCGGTGGGGTTGGGCTCGCGCGTTTAAT
CAGTGTCGATTCTGCAGAAAATATCGTGCGTTATTCCAGCCAACAATTACAGCATTTGGGATTAAAAGCCGCGCAAATCC
GTTATCTTCAACAGCCGTCGCACCCTGAAGTAGAGCAATGTTTACAATGGCAAGCTGAGTCTGATTGGCATCATATTGTG
TCGCCATTAGAAGATGACTATCCTTATTTACTCAATCAAATGTCTTCTCACCCTCCGGTGCTTTTTGTTAAAGGTGATGC
TTCTGTTTTACATCGTCAACAAGTGGCAATCGTCGGTAGCCGCCATGCCAGCTTGGAAGGATTAAAAGCGGCCAAGGAGT
TTGCCTATCAATTAGCAGAACAAGGCCTCACTATTACCAGTGGTTTGGCGTTAGGGATTGATGGTCATGCTCATGATGGC
GCTTTATTGGCGCAAGGAACAACGGTGGCGGTCTTAGGTTCAGGGGTTGAGCAAATTTACCCTGCTCGCCATAAAGGGTT
AGCGGAACGTATTGTGCAACAAGGGGGGGCGTTAGTGTCGGAACTGAGGCCCGATACCAAACCACGTGCGGAACATTTCC
CTCGGCGCAATCGTATTATCAGTGGCTTATCTCAAGGTGTGTTAGTAGTAGAGGCGGCAGAGCGCAGCGGTTCTCTGATC
ACGGCCCGTTACGCCATTGAACAAAATCGCGATGTTTTTGCTTTGCCAGGTTCAATTTATCAAGCTGGGTTTGCAGGTAG
TAATCGATTATTGCAGCAAGGAGCGTATTTAGCGTTAAGCCCACAAGATATTATTGATGAATTAAATCCCTCACTGACTC
GCCCCTTTTCTCTTCCTAGGTCTTCACAAAGTCAGCTAAACTTAATACCAGAGGCATCACCGCCTCCTGTAGAAAATCAC
AGTCAATCATTGCCATTTCCACAACTGTTCGCTAACGTAGGAAATGAACCAACCCCCGTTGATATTTTAGCGGAACGTAC
CCATATACCGGTACATGAAGTTATGATGCAAATATTAGAGCTGGAATTAGCCGGTTATGTTAGTTCTGTGCCAGGTGGGT
ATATTCTCAATCATGGGAGTAAACCAAAGTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(314-373)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.754

97.65

0.564
  dprA Vibrio cholerae strain A1552

53.6

97.911

0.525
  dprA Glaesserella parasuis strain SC1401

44.271

100

0.444
  dprA Haemophilus influenzae Rd KW20

44.575

89.034

0.397
  dprA Neisseria meningitidis MC58

37.722

100

0.389
  dprA Neisseria meningitidis strain C311

37.722

100

0.389
  dprA Neisseria gonorrhoeae strain FA1090

37.084

100

0.379
  dprA Neisseria gonorrhoeae MS11

36.829

100

0.376
  dprA Legionella pneumophila strain ERS1305867

40.922

90.601

0.371
  dprA Acinetobacter baumannii strain A118

40.23

90.862

0.366

Multiple sequence alignment