Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NKT35_RS05185 Genome accession   NZ_CP100128
Coordinates   1105556..1106632 (+) Length   358 a.a.
NCBI ID   WP_254299478.1    Uniprot ID   -
Organism   Chromobacterium sp. IIBBL 290-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1100556..1111632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT35_RS05160 (NKT35_05160) rsmB 1100678..1101928 (-) 1251 WP_254299468.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NKT35_RS05165 (NKT35_05165) htpX 1101999..1102856 (-) 858 WP_254299470.1 zinc metalloprotease HtpX -
  NKT35_RS05170 (NKT35_05170) fmt 1102899..1103822 (-) 924 WP_254299472.1 methionyl-tRNA formyltransferase -
  NKT35_RS05175 (NKT35_05175) def 1103892..1104395 (-) 504 WP_254299474.1 peptide deformylase -
  NKT35_RS05180 (NKT35_05180) - 1104522..1105559 (+) 1038 WP_254299476.1 LysM peptidoglycan-binding domain-containing protein -
  NKT35_RS05185 (NKT35_05185) dprA 1105556..1106632 (+) 1077 WP_254299478.1 DNA-processing protein DprA Machinery gene
  NKT35_RS05190 (NKT35_05190) - 1106662..1107120 (+) 459 WP_254299480.1 DUF494 family protein -
  NKT35_RS05195 (NKT35_05195) topA 1107274..1109583 (+) 2310 WP_254299482.1 type I DNA topoisomerase -
  NKT35_RS05200 (NKT35_05200) - 1109846..1110232 (+) 387 WP_254299484.1 hypothetical protein -
  NKT35_RS05205 (NKT35_05205) - 1110616..1110918 (+) 303 WP_254299485.1 hypothetical protein -
  NKT35_RS05210 (NKT35_05210) - 1111064..1111444 (-) 381 WP_371926491.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 36880.03 Da        Isoelectric Point: 5.3743

>NTDB_id=703706 NKT35_RS05185 WP_254299478.1 1105556..1106632(+) (dprA) [Chromobacterium sp. IIBBL 290-4]
MTASSSWLQLTLTPGIGPVGFLKLIQAFGSAEAAAGARAAQTEKLIGREAAEALQNQAAAEAVSAAEAWAQGEGCHLITL
LDDDYPPQLAESDTPPPLLFGRGRRELLSQPMLAVVGSRAATPQGKRNAEDFASALAAHGYTIVSGLASGIDAAAHQGAL
AHPASTIAVIGTGIDRVYPASNRQLAHRIAAEGLILSEFPLGMGPLAGHFPRRNRIIAGLARGCLVVEASTASGSLITAR
LAMESNRDVMAIPGSIHNAQARGCHRLIKDGARLAETVDDVLDEIGRLPSGIAPEPSAVAETASPLLAGMGWEPVLAESL
AGTLGLTPGEVYAMLLELELSGQVASLPGGRFQRLAQP

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=703706 NKT35_RS05185 WP_254299478.1 1105556..1106632(+) (dprA) [Chromobacterium sp. IIBBL 290-4]
ATGACCGCATCCTCCTCCTGGCTCCAACTGACGCTGACGCCCGGCATCGGGCCGGTCGGCTTTCTCAAGCTGATCCAGGC
CTTCGGCTCGGCCGAAGCCGCCGCCGGCGCGCGCGCCGCGCAAACCGAAAAACTGATAGGCCGCGAAGCCGCCGAAGCCC
TGCAGAACCAAGCGGCGGCCGAAGCCGTCTCCGCCGCCGAGGCTTGGGCCCAAGGCGAAGGCTGCCACCTGATCACGCTC
TTGGACGACGACTACCCGCCGCAACTGGCCGAATCCGACACGCCGCCGCCGCTGCTGTTCGGCCGCGGCCGCCGCGAGCT
GCTCAGCCAGCCCATGCTGGCCGTGGTGGGCAGCCGCGCCGCCACGCCGCAGGGCAAACGCAATGCCGAGGACTTCGCCT
CCGCCCTGGCCGCGCACGGCTACACCATCGTCAGCGGCCTGGCCAGCGGCATCGATGCCGCCGCGCATCAGGGCGCGCTG
GCGCATCCGGCCTCCACCATCGCGGTGATAGGCACTGGCATAGACCGCGTCTATCCGGCGTCCAATCGCCAGCTGGCGCA
CCGCATCGCGGCGGAAGGCCTGATCCTGTCGGAGTTTCCGCTGGGCATGGGTCCCTTGGCCGGCCATTTTCCGCGCCGCA
ACCGCATCATCGCCGGCCTGGCGCGCGGCTGCCTGGTGGTGGAAGCCAGCACGGCGTCCGGCTCCCTGATCACCGCGCGG
CTGGCGATGGAAAGCAACCGCGACGTGATGGCGATACCCGGCAGCATCCACAACGCCCAGGCGCGAGGCTGCCACCGGCT
GATCAAAGACGGCGCCCGGCTGGCGGAAACCGTTGACGATGTGCTGGACGAGATCGGCCGGCTGCCCTCAGGCATAGCCC
CCGAGCCGTCCGCCGTCGCTGAAACCGCCTCGCCGCTGCTGGCCGGCATGGGCTGGGAACCGGTGTTGGCCGAGTCGCTT
GCCGGCACGCTTGGGTTGACTCCTGGGGAGGTTTACGCGATGCTGCTCGAACTTGAGCTATCCGGCCAGGTGGCCAGCCT
GCCGGGCGGCCGTTTCCAGCGGCTGGCACAACCGTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(294-350)

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

48.196

100

0.522
  dprA Neisseria meningitidis MC58

48.196

100

0.522
  dprA Neisseria gonorrhoeae strain FA1090

47.668

100

0.514
  dprA Neisseria gonorrhoeae MS11

47.668

100

0.514
  dprA Vibrio campbellii strain DS40M4

41.551

100

0.419
  dprA Acinetobacter baylyi ADP1

39.286

100

0.399
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.227

100

0.397
  dprA Legionella pneumophila strain ERS1305867

46.528

80.447

0.374
  dprA Acinetobacter baumannii strain A118

38.71

95.251

0.369
  dprA Vibrio cholerae strain A1552

36.464

100

0.369
  dprA Acinetobacter baumannii D1279779

38.596

95.531

0.369