Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VCASEI_RS12700 Genome accession   NZ_AP018680
Coordinates   2715376..2716524 (-) Length   382 a.a.
NCBI ID   WP_089110349.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2710376..2721524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS12670 hemF 2710891..2711793 (-) 903 WP_086959175.1 oxygen-dependent coproporphyrinogen oxidase -
  VCASEI_RS12675 - 2711797..2712354 (-) 558 WP_086959189.1 Sua5/YciO/YrdC/YwlC family protein -
  VCASEI_RS12680 purE 2712591..2713076 (+) 486 WP_086959173.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VCASEI_RS12685 - 2713082..2714206 (+) 1125 WP_086959171.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VCASEI_RS12690 - 2714250..2714855 (-) 606 WP_089110348.1 type I DNA topoisomerase -
  VCASEI_RS12695 - 2714871..2715341 (-) 471 WP_086959167.1 DUF494 family protein -
  VCASEI_RS12700 dprA 2715376..2716524 (-) 1149 WP_089110349.1 DNA-processing protein DprA Machinery gene
  VCASEI_RS12705 - 2716539..2717687 (-) 1149 WP_089110350.1 LysM peptidoglycan-binding domain-containing protein -
  VCASEI_RS12710 def 2717819..2718334 (+) 516 WP_086959162.1 peptide deformylase -
  VCASEI_RS12715 fmt 2718413..2719375 (+) 963 WP_086959160.1 methionyl-tRNA formyltransferase -
  VCASEI_RS12720 rsmB 2719473..2720753 (+) 1281 WP_086959158.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41317.85 Da        Isoelectric Point: 6.4979

>NTDB_id=70342 VCASEI_RS12700 WP_089110349.1 2715376..2716524(-) (dprA) [Vibrio casei strain DSM 22364]
MTESQLCAWLTLSFTPKLGGVSISRLLSVDSPKNIISYSVLELQSLGLKPAQIQYIQQESNADVDQCLTWLASSGLHSIV
TPLSDRYPSLMKQMSSHPPVLFVKGNLDALHQSQIAIVGSRNASIDGLRSSREFSYEFASQGMAVTSGLALGIDGHAHDG
ALQAQGTTIAVLGSGVDQVYPSRHKGLAERIVQQGGALVSEFRPNAKPRPEHFPRRNRIISGLSQGVLVIEAAERSGSLI
TARYALEQNRDVFALPGSIYHSGHAGTNRLIQDGAIMALCAQDILDEMNPVFARSLLGNNAYSYQPVQSQLSFESTSTST
SQQQALPFPQLLANVGNEPTPVDILSERTHIPVHEIMMQILELELAGHVISVQGGYILNNKN

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=70342 VCASEI_RS12700 WP_089110349.1 2715376..2716524(-) (dprA) [Vibrio casei strain DSM 22364]
ATGACTGAATCTCAACTTTGTGCATGGTTAACTTTAAGTTTCACCCCTAAATTAGGTGGGGTATCAATATCTCGCCTTTT
ATCGGTCGATTCTCCGAAAAATATTATTAGTTATTCTGTTTTAGAGTTACAAAGTTTGGGATTAAAACCGGCTCAGATTC
AATATATTCAACAAGAATCTAATGCTGACGTTGATCAGTGTTTAACTTGGTTAGCGAGTTCAGGATTACACTCAATTGTG
ACACCTTTATCCGATCGTTATCCCAGTCTGATGAAGCAGATGTCATCTCATCCTCCAGTATTATTTGTTAAAGGTAATCT
TGATGCTTTGCATCAATCACAAATTGCCATAGTTGGGAGTCGTAATGCGAGTATTGATGGGCTTCGCTCCTCTCGTGAAT
TTTCCTATGAGTTTGCTTCTCAAGGTATGGCGGTAACGAGTGGTCTGGCGTTGGGGATCGATGGGCATGCGCATGATGGG
GCGTTGCAAGCTCAAGGAACCACTATTGCGGTATTAGGTTCTGGAGTTGATCAGGTTTATCCTTCACGTCATAAAGGCTT
AGCTGAGCGGATTGTGCAACAAGGTGGTGCGTTAGTCTCTGAGTTTCGCCCTAACGCCAAACCAAGACCTGAACATTTTC
CTCGTCGAAACCGTATCATTAGTGGATTATCTCAAGGTGTGTTGGTGATTGAAGCTGCCGAACGCAGTGGATCTCTAATT
ACTGCCCGTTATGCACTGGAGCAAAACCGTGATGTATTTGCACTGCCCGGCTCCATTTATCATTCTGGACACGCTGGAAC
GAATCGTTTAATTCAAGATGGTGCAATAATGGCGCTATGTGCTCAGGATATTCTTGATGAAATGAATCCAGTGTTTGCTC
GGTCTTTATTGGGGAATAATGCTTATAGTTACCAACCTGTTCAATCCCAATTAAGTTTTGAATCAACATCAACATCAACA
TCGCAACAGCAAGCATTGCCATTTCCTCAACTGTTGGCTAACGTAGGAAATGAACCTACCCCGGTTGATATTTTGTCTGA
ACGTACCCATATACCGGTACATGAGATAATGATGCAAATTTTGGAGCTTGAATTAGCGGGGCATGTTATTTCGGTTCAAG
GAGGCTATATTCTTAATAATAAGAATTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(321-375)

DNA recombination-mediator protein A (DNA_processg_A)

(78-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.527

97.382

0.56
  dprA Vibrio cholerae strain A1552

52.618

100

0.526
  dprA Glaesserella parasuis strain SC1401

44.474

99.476

0.442
  dprA Haemophilus influenzae Rd KW20

43.064

90.576

0.39
  dprA Legionella pneumophila strain ERS1305867

43.363

88.743

0.385
  dprA Neisseria meningitidis strain C311

36.524

100

0.38
  dprA Neisseria meningitidis MC58

36.524

100

0.38
  dprA Neisseria gonorrhoeae MS11

35.516

100

0.369
  dprA Neisseria gonorrhoeae strain FA1090

35.264

100

0.366

Multiple sequence alignment