Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | NI391_RS04865 | Genome accession | NZ_CP099951 |
| Coordinates | 1038656..1038940 (+) | Length | 94 a.a. |
| NCBI ID | WP_064353730.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain Isc25B | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1033656..1043940
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NI391_RS04855 (NI391_04860) | - | 1036067..1036339 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| NI391_RS04860 (NI391_04865) | ppiD | 1036541..1038400 (+) | 1860 | WP_005382334.1 | peptidylprolyl isomerase | - |
| NI391_RS04865 (NI391_04870) | comEA | 1038656..1038940 (+) | 285 | WP_064353730.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| NI391_RS04870 (NI391_04875) | rrtA | 1039038..1039589 (-) | 552 | WP_005382331.1 | rhombosortase | - |
| NI391_RS04875 (NI391_04880) | - | 1039593..1040207 (+) | 615 | WP_054575199.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| NI391_RS04880 (NI391_04885) | - | 1040214..1041536 (-) | 1323 | WP_064353724.1 | anti-phage deoxyguanosine triphosphatase | - |
| NI391_RS04885 (NI391_04890) | yfbR | 1041552..1042136 (-) | 585 | WP_062730721.1 | 5'-deoxynucleotidase | - |
| NI391_RS04890 (NI391_04895) | - | 1042227..1043441 (-) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10292.93 Da Isoelectric Point: 5.1421
>NTDB_id=702834 NI391_RS04865 WP_064353730.1 1038656..1038940(+) (comEA) [Vibrio alginolyticus strain Isc25B]
MKWILTLCLFVCAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVCAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=702834 NI391_RS04865 WP_064353730.1 1038656..1038940(+) (comEA) [Vibrio alginolyticus strain Isc25B]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTGTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTGTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
87.234 |
100 |
0.872 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
59.794 |
100 |
0.617 |
| comEA | Vibrio cholerae strain A1552 |
59.794 |
100 |
0.617 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE | Neisseria gonorrhoeae MS11 |
41.573 |
94.681 |
0.394 |
| comE | Neisseria gonorrhoeae MS11 |
41.573 |
94.681 |
0.394 |
| comE | Neisseria gonorrhoeae MS11 |
41.573 |
94.681 |
0.394 |
| comE | Neisseria gonorrhoeae MS11 |
41.573 |
94.681 |
0.394 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |