Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NI380_RS11200 Genome accession   NZ_CP099934
Coordinates   2384133..2384417 (-) Length   94 a.a.
NCBI ID   WP_069485356.1    Uniprot ID   A0A7Y0X7F7
Organism   Vibrio parahaemolyticus strain BM26A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2379133..2389417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS11175 (NI380_11525) - 2379627..2380841 (+) 1215 WP_005456922.1 pyridoxal phosphate-dependent aminotransferase -
  NI380_RS11180 (NI380_11530) yfbR 2380932..2381516 (+) 585 WP_005482513.1 5'-deoxynucleotidase -
  NI380_RS11185 (NI380_11535) - 2381529..2382863 (+) 1335 WP_041954079.1 anti-phage deoxyguanosine triphosphatase -
  NI380_RS11190 (NI380_11540) - 2382873..2383487 (-) 615 WP_005456903.1 tRNA-uridine aminocarboxypropyltransferase -
  NI380_RS11195 (NI380_11545) rrtA 2383491..2384042 (+) 552 WP_005495980.1 rhombosortase -
  NI380_RS11200 (NI380_11550) comEA 2384133..2384417 (-) 285 WP_069485356.1 ComEA family DNA-binding protein Machinery gene
  NI380_RS11205 (NI380_11555) ppiD 2384568..2386427 (-) 1860 WP_069485244.1 peptidylprolyl isomerase -
  NI380_RS11210 (NI380_11560) - 2386627..2386899 (-) 273 WP_005382341.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10283.93 Da        Isoelectric Point: 5.8425

>NTDB_id=702736 NI380_RS11200 WP_069485356.1 2384133..2384417(-) (comEA) [Vibrio parahaemolyticus strain BM26A]
MKWILTLCLVVFAPFSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=702736 NI380_RS11200 WP_069485356.1 2384133..2384417(-) (comEA) [Vibrio parahaemolyticus strain BM26A]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCATTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0X7F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

98.936

100

0.989
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

61.702

100

0.617
  comEA Vibrio cholerae strain A1552

61.702

100

0.617
  comE Neisseria gonorrhoeae MS11

40

95.745

0.383
  comE Neisseria gonorrhoeae MS11

40

95.745

0.383
  comE Neisseria gonorrhoeae MS11

40

95.745

0.383
  comE Neisseria gonorrhoeae MS11

40

95.745

0.383
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362