Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NEE09_RS03985 Genome accession   NZ_CP099641
Coordinates   735270..735740 (+) Length   156 a.a.
NCBI ID   WP_000609600.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 730270..740740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS03955 - 730554..731102 (-) 549 WP_000039617.1 NADPH-dependent FMN reductase -
  NEE09_RS03960 - 731423..731911 (+) 489 WP_000747253.1 DUF5590 domain-containing protein -
  NEE09_RS03965 - 731908..733095 (+) 1188 WP_000777773.1 pyridoxal phosphate-dependent aminotransferase -
  NEE09_RS03970 - 733088..733453 (+) 366 WP_000565218.1 VOC family protein -
  NEE09_RS03975 asnS 733472..734815 (+) 1344 WP_000167151.1 asparagine--tRNA ligase -
  NEE09_RS03980 rpsF 734968..735258 (+) 291 WP_001151785.1 30S ribosomal protein S6 -
  NEE09_RS03985 ssbA 735270..735740 (+) 471 WP_000609600.1 single-stranded DNA-binding protein SsbA Machinery gene
  NEE09_RS03990 rpsR 735772..736011 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  NEE09_RS03995 - 736306..737706 (+) 1401 WP_000339025.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NEE09_RS04000 - 737708..738067 (+) 360 WP_000689596.1 S1 RNA-binding domain-containing protein -
  NEE09_RS04005 - 738121..738870 (+) 750 WP_000390783.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NEE09_RS04010 - 738860..739159 (+) 300 WP_000349601.1 GIY-YIG nuclease family protein -
  NEE09_RS04015 - 739230..740165 (+) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17420.32 Da        Isoelectric Point: 5.8989

>NTDB_id=701201 NEE09_RS03985 WP_000609600.1 735270..735740(+) (ssbA) [Streptococcus pneumoniae strain ATCC 700671]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLERRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=701201 NEE09_RS03985 WP_000609600.1 735270..735740(+) (ssbA) [Streptococcus pneumoniae strain ATCC 700671]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGACGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.731

66.667

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

69.872

0.372